SMTL ID : 7mtb.1

Rhodopsin kinase (GRK1)-S5E/S488E/T489E in complex with rhodopsin and Fab6

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x SGV: SANGIVAMYCIN(Non-covalent)

SGV.1: 11 residues within 4Å: Chain A: L.193, G.194, V.201, A.214, M.264, T.265, M.267, D.271, E.318, L.321, K.479 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.201, A:L.321 Hydrogen bonds: A:T.265, A:M.267, A:D.271

1 x RET: RETINAL(Covalent)

RET.2: 14 residues within 4Å: Chain D: A.117, E.122, E.181, I.189, Y.191, M.207, F.208, H.211, F.212, W.265, Y.268, A.269, A.272, K.296 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:A.117, D:I.189, D:Y.191, D:H.211, D:F.212, D:W.265, D:Y.268, D:Y.268, D:Y.268, D:A.272, D:K.296

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Q. et al., Structures of rhodopsin in complex with G-protein-coupled receptor kinase 1. Nature (2021)

Release Date

2021-07-07

Peptides

Rhodopsin kinase GRK1: A
Fab6 heavy chain: B
Fab6 light chain: C
Rhodopsin: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
L

D
R

Membrane

We predict this structure to be a membrane protein.
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Rhodopsin kinase GRK1

Fab6 heavy chain

Fab6 light chain

Rhodopsin

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