- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.26 Å
- Oligo State
- homo-octamer
- Ligands
- 16 x MN: MANGANESE (II) ION(Non-covalent)
- 8 x QQ4: Hexa Vinylpyrrolidone K15(Non-covalent)
QQ4.3: 5 residues within 4Å:- Chain A: M.32, F.66, I.79, E.81, G.82
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:F.66, A:F.66
QQ4.9: 5 residues within 4Å:- Chain B: M.32, F.66, I.79, E.81, G.82
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:F.66, B:F.66
QQ4.15: 5 residues within 4Å:- Chain C: M.32, F.66, I.79, E.81, G.82
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:F.66, C:F.66
QQ4.21: 5 residues within 4Å:- Chain D: M.32, F.66, I.79, E.81, G.82
2 PLIP interactions:2 interactions with chain D- Hydrophobic interactions: D:F.66, D:F.66
QQ4.27: 5 residues within 4Å:- Chain E: M.32, F.66, I.79, E.81, G.82
2 PLIP interactions:2 interactions with chain E- Hydrophobic interactions: E:F.66, E:F.66
QQ4.33: 5 residues within 4Å:- Chain F: M.32, F.66, I.79, E.81, G.82
2 PLIP interactions:2 interactions with chain F- Hydrophobic interactions: F:F.66, F:F.66
QQ4.39: 5 residues within 4Å:- Chain G: M.32, F.66, I.79, E.81, G.82
2 PLIP interactions:2 interactions with chain G- Hydrophobic interactions: G:F.66, G:F.66
QQ4.45: 5 residues within 4Å:- Chain H: M.32, F.66, I.79, E.81, G.82
2 PLIP interactions:2 interactions with chain H- Hydrophobic interactions: H:F.66, H:F.66
- 8 x 0VL: benzyl {2-[(5S)-5-hydroxy-4-oxo-6-{[2-(pyridin-4-yl)ethyl]carbamoyl}-4,5-dihydropyrimidin-2-yl]propan-2-yl}carbamate(Non-covalent)
0VL.4: 14 residues within 4Å:- Chain A: A.40, M.41, Y.44, E.46, I.58, H.61, E.81, L.107, D.109, E.120, I.121, Y.131
- Ligands: MN.1, MN.2
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:A.40, A:Y.44, A:Y.44, A:I.58
- Hydrogen bonds: A:Y.131
- Water bridges: A:V.123, A:Y.131
0VL.10: 14 residues within 4Å:- Chain B: A.40, M.41, Y.44, E.46, I.58, H.61, E.81, L.107, D.109, E.120, I.121, Y.131
- Ligands: MN.7, MN.8
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:A.40, B:Y.44, B:Y.44, B:I.58
- Hydrogen bonds: B:Y.131
- Water bridges: B:V.123, B:Y.131
0VL.16: 14 residues within 4Å:- Chain C: A.40, M.41, Y.44, E.46, I.58, H.61, E.81, L.107, D.109, E.120, I.121, Y.131
- Ligands: MN.13, MN.14
7 PLIP interactions:7 interactions with chain C- Hydrophobic interactions: C:A.40, C:Y.44, C:Y.44, C:I.58
- Hydrogen bonds: C:Y.131
- Water bridges: C:V.123, C:Y.131
0VL.22: 14 residues within 4Å:- Chain D: A.40, M.41, Y.44, E.46, I.58, H.61, E.81, L.107, D.109, E.120, I.121, Y.131
- Ligands: MN.19, MN.20
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:A.40, D:Y.44, D:Y.44, D:I.58
- Hydrogen bonds: D:I.121, D:Y.131
- Water bridges: D:V.123, D:Y.131
0VL.28: 14 residues within 4Å:- Chain E: A.40, M.41, Y.44, E.46, I.58, H.61, E.81, L.107, D.109, E.120, I.121, Y.131
- Ligands: MN.25, MN.26
6 PLIP interactions:6 interactions with chain E- Hydrophobic interactions: E:A.40, E:Y.44, E:Y.44, E:I.58
- Water bridges: E:V.123, E:Y.131
0VL.34: 14 residues within 4Å:- Chain F: A.40, M.41, Y.44, E.46, I.58, H.61, E.81, L.107, D.109, E.120, I.121, Y.131
- Ligands: MN.31, MN.32
6 PLIP interactions:6 interactions with chain F- Hydrophobic interactions: F:A.40, F:Y.44, F:Y.44, F:I.58
- Water bridges: F:V.123, F:Y.131
0VL.40: 14 residues within 4Å:- Chain G: A.40, M.41, Y.44, E.46, I.58, H.61, E.81, L.107, D.109, E.120, I.121, Y.131
- Ligands: MN.37, MN.38
6 PLIP interactions:6 interactions with chain G- Hydrophobic interactions: G:A.40, G:Y.44, G:Y.44, G:I.58
- Water bridges: G:V.123, G:Y.131
0VL.46: 14 residues within 4Å:- Chain H: A.40, M.41, Y.44, E.46, I.58, H.61, E.81, L.107, D.109, E.120, I.121, Y.131
- Ligands: MN.43, MN.44
8 PLIP interactions:8 interactions with chain H- Hydrophobic interactions: H:A.40, H:Y.44, H:Y.44, H:I.58
- Hydrogen bonds: H:I.121
- Water bridges: H:D.109, H:V.123, H:Y.131
- 16 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 5 residues within 4Å:- Chain A: E.51, T.52, N.53, K.54, S.195
Ligand excluded by PLIPSO4.6: 4 residues within 4Å:- Chain A: G.72, S.73, R.76, K.114
Ligand excluded by PLIPSO4.11: 5 residues within 4Å:- Chain B: E.51, T.52, N.53, K.54, S.195
Ligand excluded by PLIPSO4.12: 4 residues within 4Å:- Chain B: G.72, S.73, R.76, K.114
Ligand excluded by PLIPSO4.17: 5 residues within 4Å:- Chain C: E.51, T.52, N.53, K.54, S.195
Ligand excluded by PLIPSO4.18: 4 residues within 4Å:- Chain C: G.72, S.73, R.76, K.114
Ligand excluded by PLIPSO4.23: 5 residues within 4Å:- Chain D: E.51, T.52, N.53, K.54, S.195
Ligand excluded by PLIPSO4.24: 4 residues within 4Å:- Chain D: G.72, S.73, R.76, K.114
Ligand excluded by PLIPSO4.29: 5 residues within 4Å:- Chain E: E.51, T.52, N.53, K.54, S.195
Ligand excluded by PLIPSO4.30: 4 residues within 4Å:- Chain E: G.72, S.73, R.76, K.114
Ligand excluded by PLIPSO4.35: 5 residues within 4Å:- Chain F: E.51, T.52, N.53, K.54, S.195
Ligand excluded by PLIPSO4.36: 4 residues within 4Å:- Chain F: G.72, S.73, R.76, K.114
Ligand excluded by PLIPSO4.41: 5 residues within 4Å:- Chain G: E.51, T.52, N.53, K.54, S.195
Ligand excluded by PLIPSO4.42: 4 residues within 4Å:- Chain G: G.72, S.73, R.76, K.114
Ligand excluded by PLIPSO4.47: 5 residues within 4Å:- Chain H: E.51, T.52, N.53, K.54, S.195
Ligand excluded by PLIPSO4.48: 4 residues within 4Å:- Chain H: G.72, S.73, R.76, K.114
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Slavish, P.J. et al., Chemical scaffold recycling: Structure-guided conversion of an HIV integrase inhibitor into a potent influenza virus RNA-dependent RNA polymerase inhibitor designed to minimize resistance potential. Eur.J.Med.Chem. (2023)
- Release Date
- 2022-06-08
- Peptides
- Polymerase acidic protein,Polymerase acidic protein: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.26 Å
- Oligo State
- homo-octamer
- Ligands
- 16 x MN: MANGANESE (II) ION(Non-covalent)
- 8 x QQ4: Hexa Vinylpyrrolidone K15(Non-covalent)
- 8 x 0VL: benzyl {2-[(5S)-5-hydroxy-4-oxo-6-{[2-(pyridin-4-yl)ethyl]carbamoyl}-4,5-dihydropyrimidin-2-yl]propan-2-yl}carbamate(Non-covalent)
- 16 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Slavish, P.J. et al., Chemical scaffold recycling: Structure-guided conversion of an HIV integrase inhibitor into a potent influenza virus RNA-dependent RNA polymerase inhibitor designed to minimize resistance potential. Eur.J.Med.Chem. (2023)
- Release Date
- 2022-06-08
- Peptides
- Polymerase acidic protein,Polymerase acidic protein: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A