- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 3.43 Å
- Oligo State
- hetero-3-3-1-1-1-1-2-2-1-2-1-mer
- Ligands
- 7 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.1: 16 residues within 4Å:- Chain A: S.17, H.18, H.20, G.38, L.39, V.40, G.73, T.74, G.75, K.76, T.77, A.78, Y.366, I.374, L.403, R.404
18 PLIP interactions:18 interactions with chain A- Hydrogen bonds: A:S.17, A:H.18, A:V.40, A:V.40, A:P.71, A:G.73, A:T.74, A:T.74, A:G.75, A:K.76, A:T.77, A:T.77, A:A.78, A:Y.366
- Salt bridges: A:H.18, A:K.76, A:R.404, A:R.404
ADP.2: 17 residues within 4Å:- Chain B: A.24, H.25, H.27, I.28, G.45, M.46, V.47, P.79, G.80, T.81, G.82, K.83, T.84, A.85, Y.362, L.399, R.400
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:H.25, B:V.47, B:G.80, B:T.81, B:G.82, B:K.83, B:T.84, B:A.85, B:Y.362, B:Y.362
- Salt bridges: B:H.25, B:K.83, B:R.400, B:R.400
ADP.4: 15 residues within 4Å:- Chain E: S.17, H.18, H.20, G.38, L.39, V.40, P.72, G.73, T.74, G.75, K.76, T.77, A.78, Y.366, R.404
15 PLIP interactions:15 interactions with chain E- Hydrogen bonds: E:S.17, E:H.18, E:V.40, E:V.40, E:G.73, E:T.74, E:G.75, E:K.76, E:T.77, E:A.78, E:Y.366
- Salt bridges: E:H.18, E:K.76, E:R.404, E:R.404
ADP.5: 15 residues within 4Å:- Chain E: R.357
- Chain F: A.24, H.25, H.27, M.46, V.47, P.79, G.80, T.81, G.82, K.83, T.84, A.85, Y.362, R.400
16 PLIP interactions:15 interactions with chain F, 1 interactions with chain E- Hydrogen bonds: F:A.24, F:V.47, F:G.80, F:T.81, F:G.82, F:G.82, F:K.83, F:T.84, F:T.84, F:A.85, F:Y.362
- Salt bridges: F:K.83, F:K.83, F:R.400, F:R.400, E:R.357
ADP.6: 17 residues within 4Å:- Chain G: H.25, H.27, G.45, M.46, V.47, P.79, G.80, T.81, G.82, K.83, T.84, A.85, Y.362, I.370, L.399, R.400, I.403
14 PLIP interactions:14 interactions with chain G- Hydrogen bonds: G:V.47, G:G.80, G:T.81, G:T.81, G:G.82, G:K.83, G:T.84, G:A.85, G:Y.362, G:Y.362, G:R.400
- Salt bridges: G:H.25, G:K.83, G:R.400
ADP.7: 13 residues within 4Å:- Chain H: Q.522, E.544, M.545, G.546, L.547, G.548, K.549, T.550, V.551, N.1184, R.1209, R.1212, L.1213
15 PLIP interactions:15 interactions with chain H- Hydrogen bonds: H:Q.522, H:Q.522, H:E.544, H:G.546, H:L.547, H:G.548, H:K.549, H:T.550, H:V.551, H:N.1184
- Salt bridges: H:K.549, H:R.1209, H:R.1209, H:R.1212, H:R.1212
ADP.9: 14 residues within 4Å:- Chain J: G.38, S.39, F.40, R.43, N.101, G.189, Y.190, G.215, S.216, E.243, H.247, G.496, M.499, Y.500
10 PLIP interactions:10 interactions with chain J- Hydrogen bonds: J:S.39, J:F.40, J:R.43, J:N.101, J:N.101, J:Y.190, J:E.243
- Salt bridges: J:R.43
- pi-Cation interactions: J:H.247, J:H.247
- 1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.3: 18 residues within 4Å:- Chain D: S.17, H.18, H.20, G.38, L.39, V.40, P.72, G.73, T.74, G.75, K.76, T.77, A.78, E.303, Y.366, I.374, R.404
- Chain F: R.353
17 PLIP interactions:16 interactions with chain D, 1 interactions with chain F- Hydrogen bonds: D:S.17, D:H.18, D:V.40, D:G.73, D:T.74, D:G.75, D:K.76, D:T.77, D:T.77, D:A.78, D:E.303, D:Y.366, D:Y.366
- Salt bridges: D:K.76, D:K.76, D:R.404, F:R.353
- 1 x ZN: ZINC ION(Non-covalent)
ZN.8: 4 residues within 4Å:- Chain I: C.309, C.314, C.330, C.334
4 PLIP interactions:4 interactions with chain I- Metal complexes: I:C.309, I:C.314, I:C.330, I:C.334
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Aggarwal, P. et al., Recognition and remodelling of nucleosomes and hexasomes by the human INO80 complex. To Be Published
- Release Date
- 2025-08-13
- Peptides
- RuvB-like 1: ADE
RuvB-like 2: BFG
INO80 complex subunit C: C
Chromatin-remodeling ATPase INO80: H
INO80 complex subunit B: I
Actin-related protein 5: J
Histone H3.1: MQ
Histone H4: NR
Histone H2A.Z: O
Histone H2B type 2-E: PT
Histone H2A.Z: S - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CD
AE
BB
EF
DG
FC
IH
GI
HJ
JM
MQ
QN
NR
RO
OP
PT
TS
S
SMTL ID : 9gcg.1
CryoEM structure of the human INO80 core- H2A.Z nucleosome complex
RuvB-like 1
RuvB-like 2
INO80 complex subunit C
Chromatin-remodeling ATPase INO80
INO80 complex subunit B
Actin-related protein 5
Histone H3.1
Histone H4
Histone H2A.Z
Histone H2B type 2-E
Histone H2A.Z
Related Entries With Identical Sequence
1kx3.1 | 1kx4.1 | 1kx5.1 | 1m18.1 | 1m19.1 | 1m1a.1 | 1p34.1 | 1p3a.1 | 1p3k.1 | 1p3l.1 | 1p3m.1 | 1s32.1 | 1u35.1 | 1zbb.1 | 1zla.1 | 2c9o.1 | 2c9o.2 | 2cv5.1 | 2fj7.1 | 2io5.1 | 2nzd.1 | 3b6f.1 | 3b6g.1 | 3c1b.1 | 3c1c.1 | 3c9k.1 | 3c9k.2 | 3kuy.1 | 3kxb.1 | 3lel.1 more...less...3lel.2 | 3lja.1 | 3lz0.1 | 3lz1.1 | 3mgp.1 | 3mgq.1 | 3mgr.1 | 3mgs.1 | 3mnn.1 | 3mvd.1 | 3o62.1 | 3reh.1 | 3rei.1 | 3rej.1 | 3rek.1 | 3rel.1 | 3tu4.1 | 3tu4.2 | 3ut9.1 | 3uta.1 | 3utb.1 | 3x1s.1 | 3x1t.1 | 3x1u.1 | 3x1v.1 | 4h9n.1 | 4h9o.1 | 4h9p.1 | 4h9p.2 | 4h9q.1 | 4h9q.2 | 4h9r.1 | 4h9r.2 | 4j8u.1 | 4j8v.1 | 4j8v.2 | 4j8v.3 | 4j8w.1 | 4j8x.1 | 4j8x.2 | 4j8x.3 | 4r8p.1 | 4wu8.1 | 4wu9.1 | 4xuj.1 | 5bnv.1 | 5bnx.1 | 5bo0.1 | 5bs7.1 | 5bsa.1 | 5c3i.1 | 5c3i.2 | 5c3i.3 | 5c3i.4 | 5c3i.5 | 5c3i.6 | 5cp6.1 | 5dnm.1 | 5dnn.1 | 5gsu.1 | 5gt0.1 | 5gt3.1 | 5hq2.1 | 5ja4.1 | 5kdm.1 | 5nl0.1 | 5nl0.2 | 5oaf.1 | 5oxv.1 | 5oy7.1 | 5x0y.1 | 5xf3.1 | 5xf4.1 | 5xf5.1 | 5xf6.1 | 5z3l.1 | 5z3o.1 | 5z3u.1 | 5z3v.1 | 6esf.1 | 6esg.1 | 6esh.1 | 6esi.1 | 6fml.1 | 6fo1.1 | 6h7x.1 | 6hts.1 | 6igm.1 | 6iro.1 | 6jyl.1 | 6k1p.1 | 6kiu.1 | 6kiv.1 | 6kiw.1 | 6kix.1 | 6kiz.1 | 6l9z.1 | 6la2.1 | 6la8.1 | 6la9.1 | 6lab.1 | 6ler.1 | 6ler.2 | 6m3v.1 | 6m44.1 | 6m4d.1 | 6m4g.1 | 6m4h.1 | 6nj9.1 | 6nn6.1 | 6nog.1 | 6nqa.1 | 6qi8.1 | 6qi9.1 | 6r1u.1 | 6r25.1 | 6s01.1 | 6t9l.1 | 6tda.1 | 6ugm.1 | 6uh5.1 | 6upk.1 | 6upl.1 | 6uxw.1 | 6v92.1 | 6ven.1 | 6vyp.1 | 6vyp.2 | 6wz5.1 | 6wz9.1 | 6x0n.1 | 6x59.1 | 6x5a.1 | 6xjd.1 | 7a08.1 | 7at8.1 | 7bwd.1 | 7ciz.1 | 7ciz.2 | 7ciz.3 | 7cj0.1 | 7cj0.2 | 7cro.1 | 7crp.1 | 7crq.1 | 7crr.1 | 7dbp.1 | 7e8d.1 | 7e8i.1 | 7ea8.1 | 7eg6.1 | 7egp.1 | 7enn.1 | 7jzv.1 | 7k5x.1 | 7k5y.1 | 7k60.1 | 7k61.1 | 7k63.1 | 7nl0.1 | 7oh9.1 | 7oha.1 | 7ohb.1 | 7ohc.1 | 7ole.1 | 7p6x.1 | 7swy.1 | 7tn2.1 | 7u0g.1 | 7u0i.1 | 7u0j.1 | 7u50.1 | 7u51.1 | 7u52.1 | 7u53.1 | 7uv9.1 | 7v1m.1 | 7v1m.2 | 7v6q.1 | 7v6q.2 | 7v90.1 | 7v96.1 | 7v9c.1 | 7v9j.1 | 7v9k.1 | 7v9s.1 | 7va4.1 | 7y5u.1 | 7y5v.1 | 7y5w.1 | 7y60.1 | 7y61.1 | 7y8r.1 | 7yi1.1 | 7yi4.1 | 7yi5.1 | 7zi4.1 | 7zs9.1 | 7zsa.1 | 7zsb.1 | 8atf.1 | 8av6.1 | 8cbn.1 | 8cbq.1 | 8ceo.1 | 8cww.1 | 8cze.1 | 8dk5.1 | 8evg.1 | 8evh.1 | 8evi.1 | 8evj.1 | 8f86.1 | 8g86.1 | 8g88.1 | 8g8b.1 | 8g8g.1 | 8gui.1 | 8guj.1 | 8guk.1 | 8h1t.1 | 8hag.1 | 8hah.1 | 8hai.1 | 8haj.1 | 8hak.1 | 8hal.1 | 8ham.1 | 8han.1 | 8hxy.1 | 8hxz.1 | 8hy0.1 | 8ihm.1 | 8iht.1 | 8iqf.1 | 8iqg.1 | 8j6s.1 | 8j6t.1 | 8jbx.1 | 8jcc.1 | 8jcd.1 | 8jhf.1 | 8jhg.1 | 8jho.1 | 8kd2.1 | 8kd3.1 | 8kd4.1 | 8kd5.1 | 8kd6.1 | 8kd7.1 | 8oo7.1 | 8ooa.1 | 8oop.1 | 8oos.1 | 8pc5.1 | 8pc6.1 | 8peo.1 | 8pep.1 | 8qr1.1 | 8qzm.1 | 8rgm.1 | 8siy.1 | 8sps.1 | 8spu.1 | 8syp.1 | 8t3t.1 | 8t3w.1 | 8t3y.1 | 8uxq.1 | 8v4y.1 | 8v6v.1 | 8v7l.1 | 8vfx.1 | 8vfy.1 | 8vfz.1 | 8vg0.1 | 8vg1.1 | 8vg2.1 | 8vws.1 | 8vwt.1 | 8vwu.1 | 8vwv.1 | 8w9d.1 | 8w9e.1 | 8w9f.1 | 8x15.1 | 8x19.1 | 8x1c.1 | 8xrj.1 | 8xvg.1 | 8xvs.1 | 8xvt.1 | 8yti.1 | 8yv8.1 | 9c57.1 | 9c62.1 | 9ca7.1 | 9ca8.1 | 9ca9.1 | 9caa.1 | 9cab.1 | 9cac.1 | 9cae.1 | 9cg9.1 | 9dwf.1 | 9dwg.1 | 9dwh.1 | 9dwi.1 | 9dwj.1 | 9dwk.1 | 9dwl.1 | 9dwm.1 | 9eil.1 | 9eoz.1 | 9fgq.1 | 9fh9.1 | 9gxa.1 | 9ipu.1 | 9jnp.1 | 9jnt.1 | 9jnu.1 | 9jnv.1 | 9jnw.1 | 9jnx.1 | 9jnz.1 | 9jo2.1 | 9jo5.1 | 9l1x.1 | 9l22.1 | 9liu.1 | 9nqu.1 | 9qaj.1