SMTL ID : 7pe9.1

cryo-EM structure of DEPTOR bound to human mTOR complex 2, DEPt-bound subset local refinement

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.70 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)

IHP.1: 9 residues within 4Å: Chain A: R.1650, K.1677, S.1680, K.1684, Y.1720, K.1724, R.1771, W.1808, K.1810 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:S.1680, A:Y.1720 Salt bridges: A:K.1677, A:K.1677, A:K.1677, A:K.1684, A:K.1684, A:K.1684, A:K.1724, A:K.1724, A:K.1724, A:R.1771, A:K.1810, A:K.1810

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain C: H.1515, C.1520, C.1523, C.1651 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.1515, C:C.1520, C:C.1523, C:C.1651

1 x ACE: ACETYL GROUP(Non-functional Binders)

ACE.3: 5 residues within 4Å: Chain C: R.293, W.295, Y.391, Y.970 Chain D: A.2 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:W.295, C:Y.391

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Walchli, M. et al., Regulation of human mTOR complexes by DEPTOR. Elife (2021)

Release Date

2021-09-08

Peptides

Serine/threonine-protein kinase mTOR: A
Target of rapamycin complex subunit LST8: B
Rapamycin-insensitive companion of mTOR: C
Target of rapamycin complex 2 subunit MAPKAP1: D
DEP domain-containing mTOR-interacting protein: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
E

D
G

E
I

Serine/threonine-protein kinase mTOR

Target of rapamycin complex subunit LST8

Rapamycin-insensitive companion of mTOR

Target of rapamycin complex 2 subunit MAPKAP1

DEP domain-containing mTOR-interacting protein

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