SMTL ID : 9ed7.1

Active state of mTOR on membrane

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 21 residues within 4Å: Chain A: I.2163, S.2165, Q.2167, P.2169, L.2185, K.2187, E.2190, Y.2225, I.2237, G.2238, W.2239, V.2240, T.2245, H.2340, S.2342, N.2343, M.2345, I.2356, D.2357 Ligands: MG.2, MG.3 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.2165, A:Q.2167, A:K.2187, A:G.2238, A:V.2240, A:H.2340, A:S.2342, A:D.2357 Salt bridges: A:K.2187

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: S.2165 Ligands: ANP.1 No protein-ligand interaction detected (PLIP) MG.3: 5 residues within 4Å: Chain A: K.2187, N.2343, I.2356, D.2357 Ligands: ANP.1 No protein-ligand interaction detected (PLIP) MG.6: 5 residues within 4Å: Chain C: K.19, S.20, P.37, T.38 Ligands: GSP.5 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:S.20, C:T.38

1 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)

IHP.4: 12 residues within 4Å: Chain A: R.1628, K.1655, S.1658, K.1662, Y.1698, K.1702, R.1749, L.1752, K.1753, W.1786, K.1788, P.2213 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:Y.1698 Salt bridges: A:R.1628, A:K.1655, A:K.1655, A:K.1655, A:K.1702, A:K.1702, A:K.1702, A:R.1749, A:R.1749, A:K.1753, A:K.1753, A:K.1788

1 x GSP: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE(Non-covalent)

GSP.5: 24 residues within 4Å: Chain C: Y.14, R.15, S.16, V.17, G.18, K.19, S.20, S.21, F.31, D.33, Y.35, P.37, T.38, D.60, A.62, G.63, N.119, K.120, D.122, L.123, S.149, A.150, K.151 Ligands: MG.6 18 PLIP interactions: 18 interactions with chain C Hydrogen bonds: C:S.16, C:K.19, C:K.19, C:S.20, C:S.20, C:S.21, C:S.21, C:D.33, C:Y.35, C:T.38, C:G.63, C:K.120, C:A.150 Salt bridges: C:K.19, C:D.122 pi-Stacking: C:F.31, C:F.31 pi-Cation interactions: C:K.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cui, Z. et al., Structural basis for growth factor and nutrient signal integration on the lysosomal membrane by mTORC1. To Be Published

Release Date

2025-09-10

Peptides

Serine/threonine-protein kinase mTOR: A
Target of rapamycin complex subunit LST8: B
GTP-binding protein Rheb: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
L

Serine/threonine-protein kinase mTOR

Target of rapamycin complex subunit LST8

GTP-binding protein Rheb

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