SMTL ID : 7pwd.1

Structure of an inhibited GRK2-G-beta and G-gamma complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 8DS: 4-chloranyl-N-[2-(4-chlorophenyl)ethyl]thieno[2,3-c]pyridine-2-carboxamide(Non-covalent)

8DS.1: 15 residues within 4Å: Chain A: I.197, R.199, G.200, G.203, E.204, V.205, A.218, K.220, L.222, V.255, D.272, M.274, L.324, S.334, D.335 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.205, A:K.220, A:L.324 Hydrogen bonds: A:K.220, A:M.274, A:S.334 Halogen bonds: A:I.197

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: D.326, H.328, H.330 Ligand excluded by PLIP CL.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.3: 4 residues within 4Å: Chain A: H.280, K.383, G.387, R.392 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.383, A:R.392

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 5 residues within 4Å: Chain A: L.67, D.70, F.526, D.527, N.530 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.70, A:D.70, A:D.527

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Balo, T. et al., Synthesis of thieno[2,3-c]pyridine derived GRK2 inhibitors. Monatsh Chem (2022)

Release Date

2021-10-20

Peptides

Beta-adrenergic receptor kinase 1: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

Beta-adrenergic receptor kinase 1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

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