SMTL ID : 7q89.1 (5 other biounits)

OleP mutant G92W in complex with 6DEB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 23 residues within 4Å: Chain A: V.94, L.95, H.102, R.106, F.113, I.158, A.245, G.246, T.249, Q.253, L.286, L.291, R.299, F.322, A.349, F.350, G.351, H.355, C.357, I.358, G.359, L.367 Ligands: DEB.2 15 PLIP interactions: 15 interactions with chain A, Hydrophobic interactions: A:F.113, A:I.158, A:Q.253, A:L.286, A:L.291, A:F.350, A:I.358, A:L.367 Water bridges: A:F.297 Salt bridges: A:H.102, A:R.106, A:R.299, A:H.355 pi-Stacking: A:F.350 Metal complexes: A:C.357

1 x DEB: 6-DEOXYERYTHRONOLIDE B(Non-covalent)

DEB.2: 17 residues within 4Å: Chain A: M.84, F.85, W.93, L.95, M.179, L.180, S.241, I.244, A.245, T.249, V.292, S.296, F.297, L.397, I.398 Ligands: HEM.1, GOL.43 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:M.84, A:W.93, A:A.245, A:T.249, A:V.292, A:L.397, A:I.398 Water bridges: A:F.297

37 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 2 residues within 4Å: Chain A: R.124, E.160 Ligand excluded by PLIP FMT.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP FMT.5: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP FMT.6: 2 residues within 4Å: Chain A: T.231, K.232 Ligand excluded by PLIP FMT.7: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP FMT.8: 1 residues within 4Å: Ligands: FMT.32 Ligand excluded by PLIP FMT.9: 1 residues within 4Å: Ligands: FMT.39 Ligand excluded by PLIP FMT.10: 8 residues within 4Å: Chain A: S.21, P.23, D.27, L.28, D.29, Y.32, R.399 Ligands: NA.40 Ligand excluded by PLIP FMT.11: 4 residues within 4Å: Chain A: V.300, A.301, T.302, G.315 Ligand excluded by PLIP FMT.12: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP FMT.13: 4 residues within 4Å: Chain A: S.127, D.130, S.131 Ligands: FMT.33 Ligand excluded by PLIP FMT.14: 2 residues within 4Å: Chain A: E.147 Ligands: FMT.15 Ligand excluded by PLIP FMT.15: 6 residues within 4Å: Chain A: H.139, A.143, D.144, E.147, F.148 Ligands: FMT.14 Ligand excluded by PLIP FMT.16: 3 residues within 4Å: Chain A: R.184, Q.394, G.395 Ligand excluded by PLIP FMT.17: 1 residues within 4Å: Chain A: T.311 Ligand excluded by PLIP FMT.18: 4 residues within 4Å: Chain A: L.338, D.339, F.340, H.341 Ligand excluded by PLIP FMT.19: 2 residues within 4Å: Chain A: A.17, R.45 Ligand excluded by PLIP FMT.20: 4 residues within 4Å: Chain A: E.50, P.82, G.315, P.317 Ligand excluded by PLIP FMT.21: 4 residues within 4Å: Chain A: A.74, Q.97, D.98, D.101 Ligand excluded by PLIP FMT.22: 1 residues within 4Å: Chain A: D.196 Ligand excluded by PLIP FMT.23: 1 residues within 4Å: Ligands: GOL.42 Ligand excluded by PLIP FMT.24: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP FMT.25: 4 residues within 4Å: Chain A: R.106, H.356, C.357, I.358 Ligand excluded by PLIP FMT.26: 3 residues within 4Å: Chain A: F.350, H.356, R.364 Ligand excluded by PLIP FMT.27: 3 residues within 4Å: Chain A: T.77, D.78, P.91 Ligand excluded by PLIP FMT.28: 6 residues within 4Å: Chain A: R.43, T.52, A.53, W.54, E.316, P.317 Ligand excluded by PLIP FMT.29: 2 residues within 4Å: Chain A: R.116, E.120 Ligand excluded by PLIP FMT.30: 3 residues within 4Å: Chain A: V.15, R.43, T.52 Ligand excluded by PLIP FMT.31: 1 residues within 4Å: Chain A: H.341 Ligand excluded by PLIP FMT.32: 1 residues within 4Å: Ligands: FMT.8 Ligand excluded by PLIP FMT.33: 4 residues within 4Å: Chain A: D.130, D.134, R.377 Ligands: FMT.13 Ligand excluded by PLIP FMT.34: 3 residues within 4Å: Chain A: T.174, D.177 Ligands: GOL.42 Ligand excluded by PLIP FMT.35: 1 residues within 4Å: Chain A: R.192 Ligand excluded by PLIP FMT.36: 1 residues within 4Å: Chain A: R.377 Ligand excluded by PLIP FMT.37: 2 residues within 4Å: Chain A: A.74, A.75 Ligand excluded by PLIP FMT.38: 6 residues within 4Å: Chain A: W.93, M.179, Q.194, M.198, N.237 Ligands: GOL.43 Ligand excluded by PLIP FMT.39: 1 residues within 4Å: Ligands: FMT.9 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.40: 6 residues within 4Å: Chain A: Y.32, S.293, A.294, H.321, R.399 Ligands: FMT.10 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.32, A:H.321, A:R.399 NA.41: 4 residues within 4Å: Chain A: L.66, T.73, R.299, H.355 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.299, A:R.299 Water bridges: A:T.73, A:A.354, A:A.354

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.42: 5 residues within 4Å: Chain A: A.178, L.185, V.193 Ligands: FMT.23, FMT.34 No protein-ligand interaction detected (PLIP) GOL.43: 8 residues within 4Å: Chain A: W.93, V.94, L.95, M.179, N.237, S.241 Ligands: DEB.2, FMT.38 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.94, A:L.95, A:N.237, A:S.241 GOL.44: 3 residues within 4Å: Chain A: P.16, F.20, H.31 No protein-ligand interaction detected (PLIP) GOL.45: 5 residues within 4Å: Chain A: A.33, R.36, R.327, D.328, E.329 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.36, A:D.328, A:D.328, A:E.329

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Montemiglio, L.C. et al., Point Mutations at a Key Site Alter the Cytochrome P450 OleP Structural Dynamics. Biomolecules (2021)

Release Date

2022-01-26

Peptides

Cytochrome P-450: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P-450

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