SMTL ID : 7q89.4 (5 other biounits)

OleP mutant G92W in complex with 6DEB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 21 residues within 4Å: Chain A: V.94, L.95, H.102, R.106, F.113, I.158, A.245, G.246, T.249, L.291, F.297, R.299, F.322, A.349, F.350, G.351, H.355, C.357, I.358, G.359 Ligands: DEB.2 11 PLIP interactions: 11 interactions with chain A, Hydrophobic interactions: A:F.113, A:I.158, A:L.291, A:F.350, A:I.358 Hydrogen bonds: A:F.297 Salt bridges: A:H.102, A:R.106, A:R.299, A:H.355 Metal complexes: A:C.357

1 x DEB: 6-DEOXYERYTHRONOLIDE B(Non-covalent)

DEB.2: 15 residues within 4Å: Chain A: M.84, F.85, W.93, L.95, M.179, L.180, S.241, I.244, A.245, T.249, V.292, S.296, F.297, L.397 Ligands: HEM.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:M.84, A:F.85, A:F.85, A:W.93, A:L.180, A:A.245, A:T.249, A:V.292

16 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 4 residues within 4Å: Chain A: E.306, T.309, V.310, T.311 Ligand excluded by PLIP FMT.4: 3 residues within 4Å: Chain A: H.356, R.364 Ligands: FMT.5 Ligand excluded by PLIP FMT.5: 5 residues within 4Å: Chain A: R.63, H.347, G.351, H.352 Ligands: FMT.4 Ligand excluded by PLIP FMT.6: 2 residues within 4Å: Chain A: R.63, P.346 Ligand excluded by PLIP FMT.7: 1 residues within 4Å: Chain A: E.120 Ligand excluded by PLIP FMT.8: 4 residues within 4Å: Chain A: R.184, L.185, T.186, E.189 Ligand excluded by PLIP FMT.9: 3 residues within 4Å: Chain A: R.267, L.338, F.340 Ligand excluded by PLIP FMT.10: 4 residues within 4Å: Chain A: E.39, S.42, R.43, W.54 Ligand excluded by PLIP FMT.11: 5 residues within 4Å: Chain A: D.13, V.15, P.16, A.17, R.45 Ligand excluded by PLIP FMT.12: 3 residues within 4Å: Chain A: Q.97, D.101, E.234 Ligand excluded by PLIP FMT.13: 3 residues within 4Å: Chain A: S.131, L.132, D.135 Ligand excluded by PLIP FMT.14: 3 residues within 4Å: Chain A: A.156, E.160 Ligands: FMT.17 Ligand excluded by PLIP FMT.15: 4 residues within 4Å: Chain A: A.33, R.36, R.327, D.336 Ligand excluded by PLIP FMT.16: 4 residues within 4Å: Chain A: S.21, L.22, P.23, R.399 Ligand excluded by PLIP FMT.17: 3 residues within 4Å: Chain A: R.124, E.160 Ligands: FMT.14 Ligand excluded by PLIP FMT.18: 3 residues within 4Å: Chain A: R.344, N.345, P.346 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.19: 4 residues within 4Å: Chain A: R.83, F.85, F.297, V.298 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.298 Water bridges: A:P.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Montemiglio, L.C. et al., Point Mutations at a Key Site Alter the Cytochrome P450 OleP Structural Dynamics. Biomolecules (2021)

Release Date

2022-01-26

Peptides

Cytochrome P-450: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Cytochrome P-450

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