SMTL ID : 7q89.3 (5 other biounits)

OleP mutant G92W in complex with 6DEB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 25 residues within 4Å: Chain A: V.94, L.95, H.102, R.106, F.113, I.158, A.245, G.246, T.249, S.250, Q.253, L.286, L.291, F.297, R.299, F.322, A.349, F.350, G.351, H.355, C.357, I.358, G.359, L.367 Ligands: DEB.33 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:F.113, A:I.158, A:A.245, A:T.249, A:Q.253, A:L.286, A:L.291, A:F.322, A:F.350, A:I.358, A:L.367 Hydrogen bonds: A:F.297 Salt bridges: A:H.102, A:R.106, A:R.299, A:H.355 Metal complexes: A:C.357

28 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP FMT.3: 1 residues within 4Å: Chain A: D.38 Ligand excluded by PLIP FMT.4: 5 residues within 4Å: Chain A: E.50, G.51, T.52, P.82, P.317 Ligand excluded by PLIP FMT.5: 4 residues within 4Å: Chain A: R.36, R.327, D.328, E.329 Ligand excluded by PLIP FMT.6: 3 residues within 4Å: Chain A: A.25, H.259, V.387 Ligand excluded by PLIP FMT.7: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP FMT.8: 3 residues within 4Å: Chain A: R.116, R.117, E.120 Ligand excluded by PLIP FMT.9: 3 residues within 4Å: Chain A: H.139, P.142, I.405 Ligand excluded by PLIP FMT.10: 4 residues within 4Å: Chain A: E.160, L.161, E.214, D.215 Ligand excluded by PLIP FMT.11: 2 residues within 4Å: Chain A: E.269 Ligands: GOL.32 Ligand excluded by PLIP FMT.12: 3 residues within 4Å: Chain A: L.338, D.339, F.340 Ligand excluded by PLIP FMT.13: 2 residues within 4Å: Chain A: D.333, H.334 Ligand excluded by PLIP FMT.14: 3 residues within 4Å: Chain A: G.389, L.390, K.391 Ligand excluded by PLIP FMT.15: 4 residues within 4Å: Chain A: P.19, P.23, S.293, A.294 Ligand excluded by PLIP FMT.16: 3 residues within 4Å: Chain A: A.74, A.75, T.77 Ligand excluded by PLIP FMT.17: 3 residues within 4Å: Chain A: G.140, S.141, W.408 Ligand excluded by PLIP FMT.18: 3 residues within 4Å: Chain A: S.141, S.407, W.408 Ligand excluded by PLIP FMT.19: 3 residues within 4Å: Chain A: F.350, H.356, R.364 Ligand excluded by PLIP FMT.20: 3 residues within 4Å: Chain A: L.22, T.183, Q.394 Ligand excluded by PLIP FMT.21: 2 residues within 4Å: Chain A: R.63, P.346 Ligand excluded by PLIP FMT.22: 3 residues within 4Å: Chain A: R.70, V.305, E.306 Ligand excluded by PLIP FMT.23: 4 residues within 4Å: Chain A: R.106, G.110, I.358 Ligands: FMT.29 Ligand excluded by PLIP FMT.24: 5 residues within 4Å: Chain A: P.23, H.24, A.25, W.392, Q.394 Ligand excluded by PLIP FMT.25: 2 residues within 4Å: Chain A: L.128, E.160 Ligand excluded by PLIP FMT.26: 3 residues within 4Å: Chain A: T.174, E.189, V.193 Ligand excluded by PLIP FMT.27: 6 residues within 4Å: Chain A: W.93, M.179, Q.194, M.198, N.237, V.240 Ligand excluded by PLIP FMT.28: 4 residues within 4Å: Chain A: V.331, F.332, D.333, R.344 Ligand excluded by PLIP FMT.29: 6 residues within 4Å: Chain A: F.113, C.357, I.358, A.360, Q.361 Ligands: FMT.23 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.30: 3 residues within 4Å: Chain A: F.85, F.297, V.298 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.298 Water bridges: A:S.296

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.31: 9 residues within 4Å: Chain A: D.68, S.69, F.71, T.73, Q.97, D.98, P.99, A.354, H.355 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.69, A:D.98 Water bridges: A:G.67 GOL.32: 4 residues within 4Å: Chain A: R.265, T.380, D.382 Ligands: FMT.11 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.380

1 x DEB: 6-DEOXYERYTHRONOLIDE B(Non-covalent)

DEB.33: 14 residues within 4Å: Chain A: F.85, W.93, L.95, L.180, S.241, I.244, A.245, T.249, V.292, S.296, F.297, L.397, I.398 Ligands: HEM.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.93, A:L.180, A:A.245, A:T.249, A:V.292, A:I.398

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Montemiglio, L.C. et al., Point Mutations at a Key Site Alter the Cytochrome P450 OleP Structural Dynamics. Biomolecules (2021)

Release Date

2022-01-26

Peptides

Cytochrome P-450: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Cytochrome P-450

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