SMTL ID : 7q89.2 (5 other biounits)

OleP mutant G92W in complex with 6DEB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 24 residues within 4Å: Chain A: V.94, L.95, H.102, R.106, F.113, I.158, A.245, G.246, T.249, Q.253, L.286, L.291, R.299, F.322, A.349, F.350, G.351, H.355, C.357, I.358, G.359, L.362, L.367 Ligands: DEB.2 16 PLIP interactions: 16 interactions with chain A, Hydrophobic interactions: A:F.113, A:I.158, A:Q.253, A:L.286, A:L.291, A:F.322, A:F.350, A:I.358, A:L.362, A:L.367 Water bridges: A:F.297 Salt bridges: A:H.102, A:R.106, A:R.299, A:H.355 Metal complexes: A:C.357

1 x DEB: 6-DEOXYERYTHRONOLIDE B(Non-covalent)

DEB.2: 15 residues within 4Å: Chain A: M.84, F.85, W.93, L.95, M.179, S.241, I.244, A.245, T.249, V.292, S.296, F.297, L.397 Ligands: HEM.1, GOL.43 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:M.84, A:F.85, A:W.93, A:A.245, A:T.249, A:V.292

37 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 3 residues within 4Å: Chain A: R.63, G.67, H.352 Ligand excluded by PLIP FMT.4: 3 residues within 4Å: Chain A: L.338, D.339, F.340 Ligand excluded by PLIP FMT.5: 3 residues within 4Å: Chain A: A.115, E.119, Q.361 Ligand excluded by PLIP FMT.6: 4 residues within 4Å: Chain A: R.36, R.327, D.328, E.329 Ligand excluded by PLIP FMT.7: 4 residues within 4Å: Chain A: A.74, T.77, P.91 Ligands: FMT.30 Ligand excluded by PLIP FMT.8: 2 residues within 4Å: Chain A: T.77, D.78 Ligand excluded by PLIP FMT.9: 3 residues within 4Å: Chain A: R.377, F.378, W.408 Ligand excluded by PLIP FMT.10: 2 residues within 4Å: Chain A: D.144, E.147 Ligand excluded by PLIP FMT.11: 3 residues within 4Å: Chain A: H.356, R.364 Ligands: FMT.34 Ligand excluded by PLIP FMT.12: 2 residues within 4Å: Chain A: R.344, N.345 Ligand excluded by PLIP FMT.13: 3 residues within 4Å: Chain A: G.351, H.352, H.356 Ligand excluded by PLIP FMT.14: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP FMT.15: 4 residues within 4Å: Chain A: R.43, T.52, E.316, P.317 Ligand excluded by PLIP FMT.16: 1 residues within 4Å: Chain A: H.139 Ligand excluded by PLIP FMT.17: 3 residues within 4Å: Chain A: A.188, E.189, R.192 Ligand excluded by PLIP FMT.18: 3 residues within 4Å: Chain A: R.107, K.111 Ligands: FMT.37 Ligand excluded by PLIP FMT.19: 4 residues within 4Å: Chain A: P.16, H.31 Ligands: FMT.24, GOL.42 Ligand excluded by PLIP FMT.20: 3 residues within 4Å: Chain A: E.39, S.42, R.43 Ligand excluded by PLIP FMT.21: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP FMT.22: 3 residues within 4Å: Chain A: R.124, A.156, E.160 Ligand excluded by PLIP FMT.23: 5 residues within 4Å: Chain A: V.15, P.16, A.17, R.45 Ligands: FMT.26 Ligand excluded by PLIP FMT.24: 5 residues within 4Å: Chain A: P.16, A.17, F.20 Ligands: FMT.19, GOL.42 Ligand excluded by PLIP FMT.25: 2 residues within 4Å: Chain A: R.37, R.58 Ligand excluded by PLIP FMT.26: 4 residues within 4Å: Chain A: R.45, L.46, P.47 Ligands: FMT.23 Ligand excluded by PLIP FMT.27: 2 residues within 4Å: Chain A: Y.48, G.49 Ligand excluded by PLIP FMT.28: 4 residues within 4Å: Chain A: R.70, D.304, V.305, E.306 Ligand excluded by PLIP FMT.29: 5 residues within 4Å: Chain A: P.91, Q.97, D.101, E.234 Ligands: FMT.30 Ligand excluded by PLIP FMT.30: 6 residues within 4Å: Chain A: A.74, A.96, Q.97, D.98 Ligands: FMT.7, FMT.29 Ligand excluded by PLIP FMT.31: 3 residues within 4Å: Chain A: V.146, R.173, E.402 Ligand excluded by PLIP FMT.32: 3 residues within 4Å: Chain A: D.177, R.184, L.185 Ligand excluded by PLIP FMT.33: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP FMT.34: 3 residues within 4Å: Chain A: H.356, Q.361 Ligands: FMT.11 Ligand excluded by PLIP FMT.35: 2 residues within 4Å: Chain A: A.75, T.81 Ligand excluded by PLIP FMT.36: 4 residues within 4Å: Chain A: A.17, Y.18, P.19 Ligands: GOL.42 Ligand excluded by PLIP FMT.37: 5 residues within 4Å: Chain A: R.104, R.107, L.108, D.227 Ligands: FMT.18 Ligand excluded by PLIP FMT.38: 2 residues within 4Å: Chain A: P.100, R.104 Ligand excluded by PLIP FMT.39: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.40: 5 residues within 4Å: Chain A: A.76, D.78, T.81, R.83, P.89 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.81, A:T.81, A:R.83 NA.41: 4 residues within 4Å: Chain A: R.83, F.85, F.297, V.298 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.298 Water bridges: A:A.76

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.42: 6 residues within 4Å: Chain A: P.19, F.20, S.21 Ligands: FMT.19, FMT.24, FMT.36 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.19 GOL.43: 7 residues within 4Å: Chain A: W.93, M.179, N.237, V.240, S.241, I.244 Ligands: DEB.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.237, A:S.241 Water bridges: A:S.241

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Montemiglio, L.C. et al., Point Mutations at a Key Site Alter the Cytochrome P450 OleP Structural Dynamics. Biomolecules (2021)

Release Date

2022-01-26

Peptides

Cytochrome P-450: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cytochrome P-450

Related Entries With Identical Sequence