SMTL ID : 7q89.5 (5 other biounits)

OleP mutant G92W in complex with 6DEB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 25 residues within 4Å: Chain A: V.94, L.95, H.102, R.106, F.113, I.158, L.242, A.245, G.246, T.249, S.250, Q.253, L.291, R.299, F.322, A.349, F.350, G.351, H.355, C.357, I.358, G.359, G.363 Ligands: DEB.2, FMT.7 13 PLIP interactions: 13 interactions with chain A, Hydrophobic interactions: A:V.94, A:F.113, A:I.158, A:L.242, A:L.291, A:F.350, A:I.358 Water bridges: A:F.297 Salt bridges: A:H.102, A:R.106, A:R.299, A:H.355 Metal complexes: A:C.357

1 x DEB: 6-DEOXYERYTHRONOLIDE B(Non-covalent)

DEB.2: 16 residues within 4Å: Chain A: M.84, F.85, W.93, L.95, M.179, L.180, S.241, I.244, A.245, T.249, V.292, S.296, F.297, L.397 Ligands: HEM.1, GOL.15 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:M.84, A:L.180, A:A.245, A:T.249, A:V.292

11 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 2 residues within 4Å: Chain A: T.114, R.116 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.116, A:R.116 FMT.4: 6 residues within 4Å: Chain A: R.63, H.347, G.351, H.352, H.356 Ligands: FMT.13 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.63, A:G.351 FMT.5: 2 residues within 4Å: Chain A: R.192, Q.195 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.192 FMT.6: 1 residues within 4Å: Chain A: R.192 No protein-ligand interaction detected (PLIP) FMT.7: 6 residues within 4Å: Chain A: T.289, P.290, L.291, V.292, A.349 Ligands: HEM.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.291, A:V.292, A:V.292 Water bridges: A:Q.253 FMT.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) FMT.9: 1 residues within 4Å: Chain A: D.202 No protein-ligand interaction detected (PLIP) FMT.10: 2 residues within 4Å: Chain A: G.51, T.52 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.52, A:T.52 FMT.11: 4 residues within 4Å: Chain A: D.68, S.69, F.71, P.99 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.73 FMT.12: 3 residues within 4Å: Chain A: L.161, D.215, L.216 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.216 FMT.13: 4 residues within 4Å: Chain A: F.350, H.356, R.364 Ligands: FMT.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.356, A:R.364, A:R.364

1 x NA: SODIUM ION(Non-functional Binders)

NA.14: 4 residues within 4Å: Chain A: R.83, F.85, F.297, V.298 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.298 Water bridges: A:S.296

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.15: 8 residues within 4Å: Chain A: W.93, V.94, M.179, N.237, V.240, S.241, I.244 Ligands: DEB.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.93, A:V.94, A:N.237 Water bridges: A:S.241

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Montemiglio, L.C. et al., Point Mutations at a Key Site Alter the Cytochrome P450 OleP Structural Dynamics. Biomolecules (2021)

Release Date

2022-01-26

Peptides

Cytochrome P-450: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

Cytochrome P-450

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