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SMTL ID : 7qm8.1

Endothiapepsin in complex with compound TL00150 in 40% DMSO at 298 K

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

1 x PG5: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE(Non-covalent)

PG5.1:

7 residues within 4Å:

Chain A: L.102, D.104, T.312, L.313, F.369, I.372, F.380

No protein-ligand interaction detected (PLIP)

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2:	5 residues within 4Å: Chain A: D.170, G.310, T.311, T.312 Ligands: U1H.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.312 Water bridges: A:L.313
DMS.3:	7 residues within 4Å: Chain A: G.169, D.170, T.311, Y.315, I.389, I.393 Ligands: DMS.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.311
DMS.5:	4 residues within 4Å: Chain A: G.169, I.389, I.391 Ligands: DMS.3 No protein-ligand interaction detected (PLIP)

1 x U1H: [4-(trifluoromethyl)phenyl]methanamine(Non-covalent)

U1H.4:

12 residues within 4Å:

Chain A: D.122, D.124, Y.168, D.170, S.172, S.204, F.205, D.208, I.211, L.214, G.310
Ligands: DMS.2

4 PLIP interactions:

4 interactions with chain A

Hydrophobic interactions: A:F.205
Hydrogen bonds: A:D.124
pi-Stacking: A:Y.168
Halogen bonds: A:S.204

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Huang, C.Y. et al., Probing ligand binding of endothiapepsin by `temperature-resolved' macromolecular crystallography. Acta Crystallogr D Struct Biol (2022)

Release Date

2022-08-17

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Endothiapepsin

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