SMTL ID : 7rj7.2 (1 other biounit)

CRYSTAL STRUCTURE OF AP2 ASSOCIATED KINASE 1 ISOFORM 1 COMPLEXED WITH LIGAND 2-(1-AMINO-3-METHYLBUTYL)-6- (PYRIDIN-4-YL)QUINOLINE-4-CARBONITRILE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

monomer

Ligands

1 x 5P6: 2-[(1S)-1-amino-3-methylbutyl]-6-(pyridin-4-yl)quinoline-4-carbonitrile(Non-covalent)

5P6.1: 22 residues within 4Å: Chain A: L.40, A.41, E.42, G.43, A.46, L.47, V.48, A.60, K.62, V.92, M.114, D.115, F.116, C.117, G.120, Q.121, K.166, E.168, N.169, L.171, C.181, D.182 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.40, A:A.41, A:A.46, A:V.48, A:V.48, A:A.60, A:Q.121, A:L.171, A:L.171, A:D.182 Hydrogen bonds: A:C.117, A:N.169, A:D.182, A:D.182

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain A: N.55 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.55 Water bridges: A:T.53, A:N.55 SO4.3: 3 residues within 4Å: Chain A: Y.22, R.25, R.63 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.22, A:Y.22 Water bridges: A:R.63 Salt bridges: A:R.25, A:R.63 SO4.4: 4 residues within 4Å: Chain A: G.30, S.98, I.99, N.100 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.30, A:S.98, A:I.99, A:N.100, A:N.100 SO4.5: 3 residues within 4Å: Chain A: K.206, L.211, R.214 3 PLIP interactions: 3 interactions with chain A Water bridges: A:L.211, A:L.211 Salt bridges: A:R.214 SO4.6: 4 residues within 4Å: Chain A: K.242, T.247, L.248, G.251 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.248 Salt bridges: A:K.242 SO4.7: 5 residues within 4Å: Chain A: E.252, S.253, Q.254, V.255, A.256 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.253, A:Q.254, A:V.255 Water bridges: A:Q.254, A:Q.254

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hartz, R.A. et al., Bicyclic Heterocyclic Replacement of an Aryl Amide Leading to Potent and Kinase-Selective Adaptor Protein 2-Associated Kinase 1 Inhibitors. J.Med.Chem. (2022)

Release Date

2022-02-23

Peptides

AP2-associated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

AP2-associated protein kinase 1

Related Entries With Identical Sequence