SMTL ID : 7rj8.2 (1 other biounit)

CRYSTAL STRUCTURE OF AP2 ASSOCIATED KINASE 1 ISOFORM 1 COMPLEXED WITH LIGAND (2R)-2-AMINO-N-[3-(DIFLUOROM ETHOXY)-4-(1,3-OXAZOL-5-YL)PHENYL]-4-METHYLPENTANAMIDE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

monomer

Ligands

1 x YFV: 5-[(4-aminopiperidin-1-yl)methyl]-N-{3-[5-(propan-2-yl)-1,3,4-thiadiazol-2-yl]phenyl}pyrrolo[2,1-f][1,2,4]triazin-4-amine(Non-covalent)

YFV.1: 20 residues within 4Å: Chain A: L.40, A.41, E.42, G.43, A.46, L.47, V.48, A.60, K.62, V.92, M.114, D.115, F.116, C.117, Q.121, E.168, N.169, L.171, C.181, D.182 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.40, A:A.46, A:V.48, A:L.171, A:D.182 Hydrogen bonds: A:C.117, A:E.168 Water bridges: A:K.62

1 x PG6: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE(Non-covalent)

PG6.2: 8 residues within 4Å: Chain A: D.273, C.276, L.277, Y.280, Y.297, F.298, I.317, P.318 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.273

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 7 residues within 4Å: Chain A: S.15, S.16, G.17, L.18, G.19, S.20, E.42 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.17, A:G.19, A:S.20 Water bridges: A:L.18 SO4.4: 3 residues within 4Å: Chain A: G.87, H.88, K.89 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.89 Salt bridges: A:H.88 SO4.5: 4 residues within 4Å: Chain A: F.116, C.117, R.118, H.173 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.118, A:H.173 Salt bridges: A:H.173

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hartz, R.A. et al., Bicyclic Heterocyclic Replacement of an Aryl Amide Leading to Potent and Kinase-Selective Adaptor Protein 2-Associated Kinase 1 Inhibitors. J.Med.Chem. (2022)

Release Date

2022-02-23

Peptides

AP2-associated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

AP2-associated protein kinase 1

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