SMTL ID : 7rj8.1 (1 other biounit)

CRYSTAL STRUCTURE OF AP2 ASSOCIATED KINASE 1 ISOFORM 1 COMPLEXED WITH LIGAND (2R)-2-AMINO-N-[3-(DIFLUOROM ETHOXY)-4-(1,3-OXAZOL-5-YL)PHENYL]-4-METHYLPENTANAMIDE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

monomer

Ligands

1 x 5QI: N-[3-(difluoromethoxy)-4-(1,3-oxazol-5-yl)phenyl]-D-leucinamide(Non-covalent)

5QI.1: 19 residues within 4Å: Chain A: L.40, A.41, E.42, G.43, A.46, L.47, V.48, A.60, K.62, V.92, M.114, D.115, F.116, C.117, Q.121, N.169, L.171, C.181, D.182 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:A.41, A:A.46, A:V.48, A:V.48, A:L.171 Hydrogen bonds: A:C.117, A:Q.121, A:N.169, A:D.182

1 x PG6: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE(Non-covalent)

PG6.2: 5 residues within 4Å: Chain A: Q.80, R.83, D.84, C.156, K.157 No protein-ligand interaction detected (PLIP)

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: E.252, S.253, Q.254, V.255 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.254, A:V.255 SO4.4: 3 residues within 4Å: Chain A: G.30, S.98, N.100 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.30, A:S.98, A:N.100, A:N.100 Water bridges: A:I.99 SO4.5: 3 residues within 4Å: Chain A: G.197, V.198, N.199 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.198, A:N.199 Water bridges: A:N.199, A:N.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hartz, R.A. et al., Bicyclic Heterocyclic Replacement of an Aryl Amide Leading to Potent and Kinase-Selective Adaptor Protein 2-Associated Kinase 1 Inhibitors. J.Med.Chem. (2022)

Release Date

2022-02-23

Peptides

AP2-associated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

AP2-associated protein kinase 1

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