SMTL ID : 7rs5.1

Cryo-EM structure of Kip3 (AMPPNP) bound to Taxol-Stabilized Microtubules

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-9-9-9-mer

Ligands

9 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 29 residues within 4Å: Chain A: G.10, Q.11, A.12, G.13, Q.15, I.16, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, I.171, T.179, A.180, E.183, N.206, Y.224, L.227, N.228, I.231 Chain B: L.246, N.247, K.252 Ligands: MG.2 20 PLIP interactions: 18 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.11, A:A.12, A:A.100, A:N.101, A:S.140, A:G.143, A:G.144, A:T.145, A:T.145, A:G.146, A:T.179, A:T.179, A:N.206, A:N.206, A:N.228, A:N.228, B:N.247 pi-Stacking: A:Y.224, A:Y.224 Salt bridges: B:K.252 GTP.7: 29 residues within 4Å: Chain D: G.10, Q.11, A.12, G.13, Q.15, I.16, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, I.171, T.179, A.180, E.183, N.206, Y.224, L.227, N.228, I.231 Chain E: L.246, N.247, K.252 Ligands: MG.8 20 PLIP interactions: 18 interactions with chain D, 2 interactions with chain E Hydrogen bonds: D:Q.11, D:A.12, D:A.100, D:N.101, D:S.140, D:G.143, D:G.144, D:T.145, D:T.145, D:G.146, D:T.179, D:T.179, D:N.206, D:N.206, D:N.228, D:N.228, E:N.247 pi-Stacking: D:Y.224, D:Y.224 Salt bridges: E:K.252 GTP.13: 29 residues within 4Å: Chain G: G.10, Q.11, A.12, G.13, Q.15, I.16, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, I.171, T.179, A.180, E.183, N.206, Y.224, L.227, N.228, I.231 Chain H: L.246, N.247, K.252 Ligands: MG.14 20 PLIP interactions: 18 interactions with chain G, 2 interactions with chain H Hydrogen bonds: G:Q.11, G:A.12, G:A.100, G:N.101, G:S.140, G:G.143, G:G.144, G:T.145, G:T.145, G:G.146, G:T.179, G:T.179, G:N.206, G:N.206, G:N.228, G:N.228, H:N.247 pi-Stacking: G:Y.224, G:Y.224 Salt bridges: H:K.252 GTP.19: 29 residues within 4Å: Chain J: G.10, Q.11, A.12, G.13, Q.15, I.16, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, I.171, T.179, A.180, E.183, N.206, Y.224, L.227, N.228, I.231 Chain K: L.246, N.247, K.252 Ligands: MG.20 20 PLIP interactions: 18 interactions with chain J, 2 interactions with chain K Hydrogen bonds: J:Q.11, J:A.12, J:A.100, J:N.101, J:S.140, J:G.143, J:G.144, J:T.145, J:T.145, J:G.146, J:T.179, J:T.179, J:N.206, J:N.206, J:N.228, J:N.228, K:N.247 pi-Stacking: J:Y.224, J:Y.224 Salt bridges: K:K.252 GTP.25: 29 residues within 4Å: Chain M: G.10, Q.11, A.12, G.13, Q.15, I.16, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, I.171, T.179, A.180, E.183, N.206, Y.224, L.227, N.228, I.231 Chain N: L.246, N.247, K.252 Ligands: MG.26 20 PLIP interactions: 18 interactions with chain M, 2 interactions with chain N Hydrogen bonds: M:Q.11, M:A.12, M:A.100, M:N.101, M:S.140, M:G.143, M:G.144, M:T.145, M:T.145, M:G.146, M:T.179, M:T.179, M:N.206, M:N.206, M:N.228, M:N.228, N:N.247 pi-Stacking: M:Y.224, M:Y.224 Salt bridges: N:K.252 GTP.31: 29 residues within 4Å: Chain P: G.10, Q.11, A.12, G.13, Q.15, I.16, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, I.171, T.179, A.180, E.183, N.206, Y.224, L.227, N.228, I.231 Chain Q: L.246, N.247, K.252 Ligands: MG.32 20 PLIP interactions: 18 interactions with chain P, 2 interactions with chain Q Hydrogen bonds: P:Q.11, P:A.12, P:A.100, P:N.101, P:S.140, P:G.143, P:G.144, P:T.145, P:T.145, P:G.146, P:T.179, P:T.179, P:N.206, P:N.206, P:N.228, P:N.228, Q:N.247 pi-Stacking: P:Y.224, P:Y.224 Salt bridges: Q:K.252 GTP.37: 29 residues within 4Å: Chain S: G.10, Q.11, A.12, G.13, Q.15, I.16, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, I.171, T.179, A.180, E.183, N.206, Y.224, L.227, N.228, I.231 Chain T: L.246, N.247, K.252 Ligands: MG.38 20 PLIP interactions: 18 interactions with chain S, 2 interactions with chain T Hydrogen bonds: S:Q.11, S:A.12, S:A.100, S:N.101, S:S.140, S:G.143, S:G.144, S:T.145, S:T.145, S:G.146, S:T.179, S:T.179, S:N.206, S:N.206, S:N.228, S:N.228, T:N.247 pi-Stacking: S:Y.224, S:Y.224 Salt bridges: T:K.252 GTP.43: 29 residues within 4Å: Chain V: G.10, Q.11, A.12, G.13, Q.15, I.16, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, I.171, T.179, A.180, E.183, N.206, Y.224, L.227, N.228, I.231 Chain W: L.246, N.247, K.252 Ligands: MG.44 20 PLIP interactions: 18 interactions with chain V, 2 interactions with chain W Hydrogen bonds: V:Q.11, V:A.12, V:A.100, V:N.101, V:S.140, V:G.143, V:G.144, V:T.145, V:T.145, V:G.146, V:T.179, V:T.179, V:N.206, V:N.206, V:N.228, V:N.228, W:N.247 pi-Stacking: V:Y.224, V:Y.224 Salt bridges: W:K.252 GTP.49: 29 residues within 4Å: Chain Y: G.10, Q.11, A.12, G.13, Q.15, I.16, D.98, A.99, A.100, N.101, S.140, G.142, G.143, G.144, T.145, G.146, I.171, T.179, A.180, E.183, N.206, Y.224, L.227, N.228, I.231 Chain Z: L.246, N.247, K.252 Ligands: MG.50 20 PLIP interactions: 18 interactions with chain Y, 2 interactions with chain Z Hydrogen bonds: Y:Q.11, Y:A.12, Y:A.100, Y:N.101, Y:S.140, Y:G.143, Y:G.144, Y:T.145, Y:T.145, Y:G.146, Y:T.179, Y:T.179, Y:N.206, Y:N.206, Y:N.228, Y:N.228, Z:N.247 pi-Stacking: Y:Y.224, Y:Y.224 Salt bridges: Z:K.252

18 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: D.98, T.145 Chain B: N.247, K.252 Ligands: GTP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.98 MG.6: 4 residues within 4Å: Chain C: T.116, S.224, S.225 Ligands: ANP.5 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:T.116, C:S.225 MG.8: 5 residues within 4Å: Chain D: D.98, T.145 Chain E: N.247, K.252 Ligands: GTP.7 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:D.98 MG.12: 4 residues within 4Å: Chain F: T.116, S.224, S.225 Ligands: ANP.11 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:T.116, F:S.225 MG.14: 5 residues within 4Å: Chain G: D.98, T.145 Chain H: N.247, K.252 Ligands: GTP.13 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:D.98 MG.18: 4 residues within 4Å: Chain I: T.116, S.224, S.225 Ligands: ANP.17 2 PLIP interactions: 2 interactions with chain I Metal complexes: I:T.116, I:S.225 MG.20: 5 residues within 4Å: Chain J: D.98, T.145 Chain K: N.247, K.252 Ligands: GTP.19 1 PLIP interactions: 1 interactions with chain J Metal complexes: J:D.98 MG.24: 4 residues within 4Å: Chain L: T.116, S.224, S.225 Ligands: ANP.23 2 PLIP interactions: 2 interactions with chain L Metal complexes: L:T.116, L:S.225 MG.26: 5 residues within 4Å: Chain M: D.98, T.145 Chain N: N.247, K.252 Ligands: GTP.25 1 PLIP interactions: 1 interactions with chain M Metal complexes: M:D.98 MG.30: 4 residues within 4Å: Chain O: T.116, S.224, S.225 Ligands: ANP.29 2 PLIP interactions: 2 interactions with chain O Metal complexes: O:T.116, O:S.225 MG.32: 5 residues within 4Å: Chain P: D.98, T.145 Chain Q: N.247, K.252 Ligands: GTP.31 1 PLIP interactions: 1 interactions with chain P Metal complexes: P:D.98 MG.36: 4 residues within 4Å: Chain R: T.116, S.224, S.225 Ligands: ANP.35 2 PLIP interactions: 2 interactions with chain R Metal complexes: R:T.116, R:S.225 MG.38: 5 residues within 4Å: Chain S: D.98, T.145 Chain T: N.247, K.252 Ligands: GTP.37 1 PLIP interactions: 1 interactions with chain S Metal complexes: S:D.98 MG.42: 4 residues within 4Å: Chain U: T.116, S.224, S.225 Ligands: ANP.41 2 PLIP interactions: 2 interactions with chain U Metal complexes: U:T.116, U:S.225 MG.44: 5 residues within 4Å: Chain V: D.98, T.145 Chain W: N.247, K.252 Ligands: GTP.43 1 PLIP interactions: 1 interactions with chain V Metal complexes: V:D.98 MG.48: 4 residues within 4Å: Chain X: T.116, S.224, S.225 Ligands: ANP.47 2 PLIP interactions: 2 interactions with chain X Metal complexes: X:T.116, X:S.225 MG.50: 5 residues within 4Å: Chain Y: D.98, T.145 Chain Z: N.247, K.252 Ligands: GTP.49 1 PLIP interactions: 1 interactions with chain Y Metal complexes: Y:D.98 MG.54: 4 residues within 4Å: Chain 0: T.116, S.224, S.225 Ligands: ANP.53 2 PLIP interactions: 2 interactions with chain 0 Metal complexes: 0:T.116, 0:S.225

9 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 23 residues within 4Å: Chain B: G.10, Q.11, C.12, G.13, Q.15, I.16, A.97, N.99, S.138, G.141, G.142, T.143, G.144, V.169, D.177, T.178, N.204, L.207, Y.222, L.225, N.226, V.229 Chain J: L.248 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:Q.11, B:C.12, B:N.99, B:S.138, B:T.143, B:T.143, B:T.143, B:T.143, B:G.144, B:N.204, B:N.204, B:N.226, B:N.226 pi-Stacking: B:Y.222, B:Y.222 GDP.9: 23 residues within 4Å: Chain E: G.10, Q.11, C.12, G.13, Q.15, I.16, A.97, N.99, S.138, G.141, G.142, T.143, G.144, V.169, D.177, T.178, N.204, L.207, Y.222, L.225, N.226, V.229 Chain V: L.248 15 PLIP interactions: 15 interactions with chain E Hydrogen bonds: E:Q.11, E:C.12, E:N.99, E:S.138, E:T.143, E:T.143, E:T.143, E:T.143, E:G.144, E:N.204, E:N.204, E:N.226, E:N.226 pi-Stacking: E:Y.222, E:Y.222 GDP.15: 23 residues within 4Å: Chain H: G.10, Q.11, C.12, G.13, Q.15, I.16, A.97, N.99, S.138, G.141, G.142, T.143, G.144, V.169, D.177, T.178, N.204, L.207, Y.222, L.225, N.226, V.229 Chain P: L.248 15 PLIP interactions: 15 interactions with chain H Hydrogen bonds: H:Q.11, H:C.12, H:N.99, H:S.138, H:T.143, H:T.143, H:T.143, H:T.143, H:G.144, H:N.204, H:N.204, H:N.226, H:N.226 pi-Stacking: H:Y.222, H:Y.222 GDP.21: 22 residues within 4Å: Chain K: G.10, Q.11, C.12, G.13, Q.15, I.16, A.97, N.99, S.138, G.141, G.142, T.143, G.144, V.169, D.177, T.178, N.204, L.207, Y.222, L.225, N.226, V.229 15 PLIP interactions: 15 interactions with chain K Hydrogen bonds: K:Q.11, K:C.12, K:N.99, K:S.138, K:T.143, K:T.143, K:T.143, K:T.143, K:G.144, K:N.204, K:N.204, K:N.226, K:N.226 pi-Stacking: K:Y.222, K:Y.222 GDP.27: 23 residues within 4Å: Chain A: L.248 Chain N: G.10, Q.11, C.12, G.13, Q.15, I.16, A.97, N.99, S.138, G.141, G.142, T.143, G.144, V.169, D.177, T.178, N.204, L.207, Y.222, L.225, N.226, V.229 15 PLIP interactions: 15 interactions with chain N Hydrogen bonds: N:Q.11, N:C.12, N:N.99, N:S.138, N:T.143, N:T.143, N:T.143, N:T.143, N:G.144, N:N.204, N:N.204, N:N.226, N:N.226 pi-Stacking: N:Y.222, N:Y.222 GDP.33: 22 residues within 4Å: Chain Q: G.10, Q.11, C.12, G.13, Q.15, I.16, A.97, N.99, S.138, G.141, G.142, T.143, G.144, V.169, D.177, T.178, N.204, L.207, Y.222, L.225, N.226, V.229 15 PLIP interactions: 15 interactions with chain Q Hydrogen bonds: Q:Q.11, Q:C.12, Q:N.99, Q:S.138, Q:T.143, Q:T.143, Q:T.143, Q:T.143, Q:G.144, Q:N.204, Q:N.204, Q:N.226, Q:N.226 pi-Stacking: Q:Y.222, Q:Y.222 GDP.39: 23 residues within 4Å: Chain G: L.248 Chain T: G.10, Q.11, C.12, G.13, Q.15, I.16, A.97, N.99, S.138, G.141, G.142, T.143, G.144, V.169, D.177, T.178, N.204, L.207, Y.222, L.225, N.226, V.229 15 PLIP interactions: 15 interactions with chain T Hydrogen bonds: T:Q.11, T:C.12, T:N.99, T:S.138, T:T.143, T:T.143, T:T.143, T:T.143, T:G.144, T:N.204, T:N.204, T:N.226, T:N.226 pi-Stacking: T:Y.222, T:Y.222 GDP.45: 22 residues within 4Å: Chain W: G.10, Q.11, C.12, G.13, Q.15, I.16, A.97, N.99, S.138, G.141, G.142, T.143, G.144, V.169, D.177, T.178, N.204, L.207, Y.222, L.225, N.226, V.229 15 PLIP interactions: 15 interactions with chain W Hydrogen bonds: W:Q.11, W:C.12, W:N.99, W:S.138, W:T.143, W:T.143, W:T.143, W:T.143, W:G.144, W:N.204, W:N.204, W:N.226, W:N.226 pi-Stacking: W:Y.222, W:Y.222 GDP.51: 23 residues within 4Å: Chain D: L.248 Chain Z: G.10, Q.11, C.12, G.13, Q.15, I.16, A.97, N.99, S.138, G.141, G.142, T.143, G.144, V.169, D.177, T.178, N.204, L.207, Y.222, L.225, N.226, V.229 15 PLIP interactions: 15 interactions with chain Z Hydrogen bonds: Z:Q.11, Z:C.12, Z:N.99, Z:S.138, Z:T.143, Z:T.143, Z:T.143, Z:T.143, Z:G.144, Z:N.204, Z:N.204, Z:N.226, Z:N.226 pi-Stacking: Z:Y.222, Z:Y.222

9 x TA1: TAXOL(Non-covalent)

TA1.4: 24 residues within 4Å: Chain B: K.19, E.22, V.23, D.26, E.27, L.215, L.217, D.224, H.227, L.228, A.231, S.234, F.270, P.272, L.273, T.274, S.275, R.276, Q.279, R.318, P.358, R.359, G.360, L.361 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:V.23, B:V.23, B:L.215, B:H.227, B:L.228, B:L.228, B:F.270, B:F.270, B:T.274, B:P.358, B:P.358, B:L.361 Hydrogen bonds: B:H.227, B:T.274, B:Q.279, B:Q.279, B:R.359 pi-Stacking: B:H.227 TA1.10: 24 residues within 4Å: Chain E: K.19, E.22, V.23, D.26, E.27, L.215, L.217, D.224, H.227, L.228, A.231, S.234, F.270, P.272, L.273, T.274, S.275, R.276, Q.279, R.318, P.358, R.359, G.360, L.361 18 PLIP interactions: 18 interactions with chain E Hydrophobic interactions: E:V.23, E:V.23, E:L.215, E:H.227, E:L.228, E:L.228, E:F.270, E:F.270, E:T.274, E:P.358, E:P.358, E:L.361 Hydrogen bonds: E:H.227, E:T.274, E:Q.279, E:Q.279, E:R.359 pi-Stacking: E:H.227 TA1.16: 24 residues within 4Å: Chain H: K.19, E.22, V.23, D.26, E.27, L.215, L.217, D.224, H.227, L.228, A.231, S.234, F.270, P.272, L.273, T.274, S.275, R.276, Q.279, R.318, P.358, R.359, G.360, L.361 18 PLIP interactions: 18 interactions with chain H Hydrophobic interactions: H:V.23, H:V.23, H:L.215, H:H.227, H:L.228, H:L.228, H:F.270, H:F.270, H:T.274, H:P.358, H:P.358, H:L.361 Hydrogen bonds: H:H.227, H:T.274, H:Q.279, H:Q.279, H:R.359 pi-Stacking: H:H.227 TA1.22: 24 residues within 4Å: Chain K: K.19, E.22, V.23, D.26, E.27, L.215, L.217, D.224, H.227, L.228, A.231, S.234, F.270, P.272, L.273, T.274, S.275, R.276, Q.279, R.318, P.358, R.359, G.360, L.361 18 PLIP interactions: 18 interactions with chain K Hydrophobic interactions: K:V.23, K:V.23, K:L.215, K:H.227, K:L.228, K:L.228, K:F.270, K:F.270, K:T.274, K:P.358, K:P.358, K:L.361 Hydrogen bonds: K:H.227, K:T.274, K:Q.279, K:Q.279, K:R.359 pi-Stacking: K:H.227 TA1.28: 24 residues within 4Å: Chain N: K.19, E.22, V.23, D.26, E.27, L.215, L.217, D.224, H.227, L.228, A.231, S.234, F.270, P.272, L.273, T.274, S.275, R.276, Q.279, R.318, P.358, R.359, G.360, L.361 18 PLIP interactions: 18 interactions with chain N Hydrophobic interactions: N:V.23, N:V.23, N:L.215, N:H.227, N:L.228, N:L.228, N:F.270, N:F.270, N:T.274, N:P.358, N:P.358, N:L.361 Hydrogen bonds: N:H.227, N:T.274, N:Q.279, N:Q.279, N:R.359 pi-Stacking: N:H.227 TA1.34: 24 residues within 4Å: Chain Q: K.19, E.22, V.23, D.26, E.27, L.215, L.217, D.224, H.227, L.228, A.231, S.234, F.270, P.272, L.273, T.274, S.275, R.276, Q.279, R.318, P.358, R.359, G.360, L.361 18 PLIP interactions: 18 interactions with chain Q Hydrophobic interactions: Q:V.23, Q:V.23, Q:L.215, Q:H.227, Q:L.228, Q:L.228, Q:F.270, Q:F.270, Q:T.274, Q:P.358, Q:P.358, Q:L.361 Hydrogen bonds: Q:H.227, Q:T.274, Q:Q.279, Q:Q.279, Q:R.359 pi-Stacking: Q:H.227 TA1.40: 24 residues within 4Å: Chain T: K.19, E.22, V.23, D.26, E.27, L.215, L.217, D.224, H.227, L.228, A.231, S.234, F.270, P.272, L.273, T.274, S.275, R.276, Q.279, R.318, P.358, R.359, G.360, L.361 18 PLIP interactions: 18 interactions with chain T Hydrophobic interactions: T:V.23, T:V.23, T:L.215, T:H.227, T:L.228, T:L.228, T:F.270, T:F.270, T:T.274, T:P.358, T:P.358, T:L.361 Hydrogen bonds: T:H.227, T:T.274, T:Q.279, T:Q.279, T:R.359 pi-Stacking: T:H.227 TA1.46: 24 residues within 4Å: Chain W: K.19, E.22, V.23, D.26, E.27, L.215, L.217, D.224, H.227, L.228, A.231, S.234, F.270, P.272, L.273, T.274, S.275, R.276, Q.279, R.318, P.358, R.359, G.360, L.361 18 PLIP interactions: 18 interactions with chain W Hydrophobic interactions: W:V.23, W:V.23, W:L.215, W:H.227, W:L.228, W:L.228, W:F.270, W:F.270, W:T.274, W:P.358, W:P.358, W:L.361 Hydrogen bonds: W:H.227, W:T.274, W:Q.279, W:Q.279, W:R.359 pi-Stacking: W:H.227 TA1.52: 24 residues within 4Å: Chain Z: K.19, E.22, V.23, D.26, E.27, L.215, L.217, D.224, H.227, L.228, A.231, S.234, F.270, P.272, L.273, T.274, S.275, R.276, Q.279, R.318, P.358, R.359, G.360, L.361 18 PLIP interactions: 18 interactions with chain Z Hydrophobic interactions: Z:V.23, Z:V.23, Z:L.215, Z:H.227, Z:L.228, Z:L.228, Z:F.270, Z:F.270, Z:T.274, Z:P.358, Z:P.358, Z:L.361 Hydrogen bonds: Z:H.227, Z:T.274, Z:Q.279, Z:Q.279, Z:R.359 pi-Stacking: Z:H.227

9 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.5: 18 residues within 4Å: Chain C: R.16, R.18, P.19, T.111, G.112, C.113, G.114, K.115, T.116, Y.117, T.118, N.221, S.224, S.225, R.226, A.259, G.260 Ligands: MG.6 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:T.111, C:G.112, C:G.114, C:G.114, C:K.115, C:R.226, C:A.259 pi-Stacking: C:Y.117, C:Y.117 ANP.11: 18 residues within 4Å: Chain F: R.16, R.18, P.19, T.111, G.112, C.113, G.114, K.115, T.116, Y.117, T.118, N.221, S.224, S.225, R.226, A.259, G.260 Ligands: MG.12 9 PLIP interactions: 9 interactions with chain F Hydrogen bonds: F:T.111, F:G.112, F:G.114, F:G.114, F:K.115, F:R.226, F:A.259 pi-Stacking: F:Y.117, F:Y.117 ANP.17: 18 residues within 4Å: Chain I: R.16, R.18, P.19, T.111, G.112, C.113, G.114, K.115, T.116, Y.117, T.118, N.221, S.224, S.225, R.226, A.259, G.260 Ligands: MG.18 9 PLIP interactions: 9 interactions with chain I Hydrogen bonds: I:T.111, I:G.112, I:G.114, I:G.114, I:K.115, I:R.226, I:A.259 pi-Stacking: I:Y.117, I:Y.117 ANP.23: 18 residues within 4Å: Chain L: R.16, R.18, P.19, T.111, G.112, C.113, G.114, K.115, T.116, Y.117, T.118, N.221, S.224, S.225, R.226, A.259, G.260 Ligands: MG.24 9 PLIP interactions: 9 interactions with chain L Hydrogen bonds: L:T.111, L:G.112, L:G.114, L:G.114, L:K.115, L:R.226, L:A.259 pi-Stacking: L:Y.117, L:Y.117 ANP.29: 18 residues within 4Å: Chain O: R.16, R.18, P.19, T.111, G.112, C.113, G.114, K.115, T.116, Y.117, T.118, N.221, S.224, S.225, R.226, A.259, G.260 Ligands: MG.30 9 PLIP interactions: 9 interactions with chain O Hydrogen bonds: O:T.111, O:G.112, O:G.114, O:G.114, O:K.115, O:R.226, O:A.259 pi-Stacking: O:Y.117, O:Y.117 ANP.35: 18 residues within 4Å: Chain R: R.16, R.18, P.19, T.111, G.112, C.113, G.114, K.115, T.116, Y.117, T.118, N.221, S.224, S.225, R.226, A.259, G.260 Ligands: MG.36 9 PLIP interactions: 9 interactions with chain R Hydrogen bonds: R:T.111, R:G.112, R:G.114, R:G.114, R:K.115, R:R.226, R:A.259 pi-Stacking: R:Y.117, R:Y.117 ANP.41: 18 residues within 4Å: Chain U: R.16, R.18, P.19, T.111, G.112, C.113, G.114, K.115, T.116, Y.117, T.118, N.221, S.224, S.225, R.226, A.259, G.260 Ligands: MG.42 9 PLIP interactions: 9 interactions with chain U Hydrogen bonds: U:T.111, U:G.112, U:G.114, U:G.114, U:K.115, U:R.226, U:A.259 pi-Stacking: U:Y.117, U:Y.117 ANP.47: 18 residues within 4Å: Chain X: R.16, R.18, P.19, T.111, G.112, C.113, G.114, K.115, T.116, Y.117, T.118, N.221, S.224, S.225, R.226, A.259, G.260 Ligands: MG.48 9 PLIP interactions: 9 interactions with chain X Hydrogen bonds: X:T.111, X:G.112, X:G.114, X:G.114, X:K.115, X:R.226, X:A.259 pi-Stacking: X:Y.117, X:Y.117 ANP.53: 18 residues within 4Å: Chain 0: R.16, R.18, P.19, T.111, G.112, C.113, G.114, K.115, T.116, Y.117, T.118, N.221, S.224, S.225, R.226, A.259, G.260 Ligands: MG.54 9 PLIP interactions: 9 interactions with chain 0 Hydrogen bonds: 0:T.111, 0:G.112, 0:G.114, 0:G.114, 0:K.115, 0:R.226, 0:A.259 pi-Stacking: 0:Y.117, 0:Y.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arellano-Santoyo, H. et al., Multimodal tubulin binding by the yeast kinesin-8, Kip3, underlies its motility and depolymerization. Biorxiv (2021)

Release Date

2022-08-17

Peptides

Tubulin alpha-1A chain: ADGJMPSVY
Tubulin beta chain: BEHKNQTWZ
yeast kinesin-8/ Kip3: CFILORUX0

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
C

G
E

J
G

M
I

P
L

S
N

V
P

Y
R

B
B

E
D

H
F

K
H

N
J

Q
M

T
O

W
Q

Z
S

C
K

F
a

I
b

L
c

O
d

R
e

U
f

X
g

0
h

Tubulin alpha-1A chain

Tubulin beta chain

yeast kinesin-8/ Kip3

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