SMTL ID : 7rs6.1

Cryo-EM structure of Kip3 (AMPPNP) bound to GMPCPP-Stabilized Microtubules

GTP.1: 26 residues within 4Å: Chain A: G.10, Q.11, A.12, Q.15, I.16, E.71, A.99, N.101, S.140, G.142, G.143, G.144, T.145, G.146, I.171, T.179, E.183, V.204, N.206, Y.224, L.227, N.228, I.231 Chain B: L.246, K.252 Ligands: MG.2 21 PLIP interactions: 19 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.11, A:A.12, A:E.71, A:E.71, A:N.101, A:S.140, A:G.143, A:G.144, A:T.145, A:T.145, A:G.146, A:T.179, A:N.206, A:N.206, A:Y.224, A:N.228, A:N.228 pi-Stacking: A:Y.224, A:Y.224 Salt bridges: B:K.252, B:K.252 GTP.7: 26 residues within 4Å: Chain D: G.10, Q.11, A.12, Q.15, I.16, E.71, A.99, N.101, S.140, G.142, G.143, G.144, T.145, G.146, I.171, T.179, E.183, V.204, N.206, Y.224, L.227, N.228, I.231 Chain E: L.246, K.252 Ligands: MG.8 21 PLIP interactions: 19 interactions with chain D, 2 interactions with chain E Hydrogen bonds: D:Q.11, D:A.12, D:E.71, D:E.71, D:N.101, D:S.140, D:G.143, D:G.144, D:T.145, D:T.145, D:G.146, D:T.179, D:N.206, D:N.206, D:Y.224, D:N.228, D:N.228 pi-Stacking: D:Y.224, D:Y.224 Salt bridges: E:K.252, E:K.252 GTP.13: 26 residues within 4Å: Chain G: G.10, Q.11, A.12, Q.15, I.16, E.71, A.99, N.101, S.140, G.142, G.143, G.144, T.145, G.146, I.171, T.179, E.183, V.204, N.206, Y.224, L.227, N.228, I.231 Chain H: L.246, K.252 Ligands: MG.14 21 PLIP interactions: 19 interactions with chain G, 2 interactions with chain H Hydrogen bonds: G:Q.11, G:A.12, G:E.71, G:E.71, G:N.101, G:S.140, G:G.143, G:G.144, G:T.145, G:T.145, G:G.146, G:T.179, G:N.206, G:N.206, G:Y.224, G:N.228, G:N.228 pi-Stacking: G:Y.224, G:Y.224 Salt bridges: H:K.252, H:K.252 GTP.19: 26 residues within 4Å: Chain J: G.10, Q.11, A.12, Q.15, I.16, E.71, A.99, N.101, S.140, G.142, G.143, G.144, T.145, G.146, I.171, T.179, E.183, V.204, N.206, Y.224, L.227, N.228, I.231 Chain K: L.246, K.252 Ligands: MG.20 21 PLIP interactions: 19 interactions with chain J, 2 interactions with chain K Hydrogen bonds: J:Q.11, J:A.12, J:E.71, J:E.71, J:N.101, J:S.140, J:G.143, J:G.144, J:T.145, J:T.145, J:G.146, J:T.179, J:N.206, J:N.206, J:Y.224, J:N.228, J:N.228 pi-Stacking: J:Y.224, J:Y.224 Salt bridges: K:K.252, K:K.252 GTP.25: 26 residues within 4Å: Chain M: G.10, Q.11, A.12, Q.15, I.16, E.71, A.99, N.101, S.140, G.142, G.143, G.144, T.145, G.146, I.171, T.179, E.183, V.204, N.206, Y.224, L.227, N.228, I.231 Chain N: L.246, K.252 Ligands: MG.26 21 PLIP interactions: 2 interactions with chain N, 19 interactions with chain M Salt bridges: N:K.252, N:K.252 Hydrogen bonds: M:Q.11, M:A.12, M:E.71, M:E.71, M:N.101, M:S.140, M:G.143, M:G.144, M:T.145, M:T.145, M:G.146, M:T.179, M:N.206, M:N.206, M:Y.224, M:N.228, M:N.228 pi-Stacking: M:Y.224, M:Y.224 GTP.31: 26 residues within 4Å: Chain P: G.10, Q.11, A.12, Q.15, I.16, E.71, A.99, N.101, S.140, G.142, G.143, G.144, T.145, G.146, I.171, T.179, E.183, V.204, N.206, Y.224, L.227, N.228, I.231 Chain Q: L.246, K.252 Ligands: MG.32 21 PLIP interactions: 19 interactions with chain P, 2 interactions with chain Q Hydrogen bonds: P:Q.11, P:A.12, P:E.71, P:E.71, P:N.101, P:S.140, P:G.143, P:G.144, P:T.145, P:T.145, P:G.146, P:T.179, P:N.206, P:N.206, P:Y.224, P:N.228, P:N.228 pi-Stacking: P:Y.224, P:Y.224 Salt bridges: Q:K.252, Q:K.252 GTP.37: 26 residues within 4Å: Chain S: G.10, Q.11, A.12, Q.15, I.16, E.71, A.99, N.101, S.140, G.142, G.143, G.144, T.145, G.146, I.171, T.179, E.183, V.204, N.206, Y.224, L.227, N.228, I.231 Chain T: L.246, K.252 Ligands: MG.38 21 PLIP interactions: 2 interactions with chain T, 19 interactions with chain S Salt bridges: T:K.252, T:K.252 Hydrogen bonds: S:Q.11, S:A.12, S:E.71, S:E.71, S:N.101, S:S.140, S:G.143, S:G.144, S:T.145, S:T.145, S:G.146, S:T.179, S:N.206, S:N.206, S:Y.224, S:N.228, S:N.228 pi-Stacking: S:Y.224, S:Y.224 GTP.43: 26 residues within 4Å: Chain V: G.10, Q.11, A.12, Q.15, I.16, E.71, A.99, N.101, S.140, G.142, G.143, G.144, T.145, G.146, I.171, T.179, E.183, V.204, N.206, Y.224, L.227, N.228, I.231 Chain W: L.246, K.252 Ligands: MG.44 21 PLIP interactions: 19 interactions with chain V, 2 interactions with chain W Hydrogen bonds: V:Q.11, V:A.12, V:E.71, V:E.71, V:N.101, V:S.140, V:G.143, V:G.144, V:T.145, V:T.145, V:G.146, V:T.179, V:N.206, V:N.206, V:Y.224, V:N.228, V:N.228 pi-Stacking: V:Y.224, V:Y.224 Salt bridges: W:K.252, W:K.252 GTP.49: 26 residues within 4Å: Chain Y: G.10, Q.11, A.12, Q.15, I.16, E.71, A.99, N.101, S.140, G.142, G.143, G.144, T.145, G.146, I.171, T.179, E.183, V.204, N.206, Y.224, L.227, N.228, I.231 Chain Z: L.246, K.252 Ligands: MG.50 21 PLIP interactions: 19 interactions with chain Y, 2 interactions with chain Z Hydrogen bonds: Y:Q.11, Y:A.12, Y:E.71, Y:E.71, Y:N.101, Y:S.140, Y:G.143, Y:G.144, Y:T.145, Y:T.145, Y:G.146, Y:T.179, Y:N.206, Y:N.206, Y:Y.224, Y:N.228, Y:N.228 pi-Stacking: Y:Y.224, Y:Y.224 Salt bridges: Z:K.252, Z:K.252

MG.2: 5 residues within 4Å: Chain A: Q.11, E.71, V.74 Chain B: K.252 Ligands: GTP.1 No protein-ligand interaction detected (PLIP) MG.4: 4 residues within 4Å: Chain B: Q.11, E.69, T.72 Ligands: G2P.3 No protein-ligand interaction detected (PLIP) MG.6: 5 residues within 4Å: Chain C: K.115, T.116, S.225, D.257 Ligands: ANP.5 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:T.116, C:S.225 MG.8: 5 residues within 4Å: Chain D: Q.11, E.71, V.74 Chain E: K.252 Ligands: GTP.7 No protein-ligand interaction detected (PLIP) MG.10: 4 residues within 4Å: Chain E: Q.11, E.69, T.72 Ligands: G2P.9 No protein-ligand interaction detected (PLIP) MG.12: 5 residues within 4Å: Chain F: K.115, T.116, S.225, D.257 Ligands: ANP.11 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:T.116, F:S.225 MG.14: 5 residues within 4Å: Chain G: Q.11, E.71, V.74 Chain H: K.252 Ligands: GTP.13 No protein-ligand interaction detected (PLIP) MG.16: 4 residues within 4Å: Chain H: Q.11, E.69, T.72 Ligands: G2P.15 No protein-ligand interaction detected (PLIP) MG.18: 5 residues within 4Å: Chain I: K.115, T.116, S.225, D.257 Ligands: ANP.17 2 PLIP interactions: 2 interactions with chain I Metal complexes: I:T.116, I:S.225 MG.20: 5 residues within 4Å: Chain J: Q.11, E.71, V.74 Chain K: K.252 Ligands: GTP.19 No protein-ligand interaction detected (PLIP) MG.22: 4 residues within 4Å: Chain K: Q.11, E.69, T.72 Ligands: G2P.21 No protein-ligand interaction detected (PLIP) MG.24: 5 residues within 4Å: Chain L: K.115, T.116, S.225, D.257 Ligands: ANP.23 2 PLIP interactions: 2 interactions with chain L Metal complexes: L:T.116, L:S.225 MG.26: 5 residues within 4Å: Chain M: Q.11, E.71, V.74 Chain N: K.252 Ligands: GTP.25 No protein-ligand interaction detected (PLIP) MG.28: 4 residues within 4Å: Chain N: Q.11, E.69, T.72 Ligands: G2P.27 No protein-ligand interaction detected (PLIP) MG.30: 5 residues within 4Å: Chain O: K.115, T.116, S.225, D.257 Ligands: ANP.29 2 PLIP interactions: 2 interactions with chain O Metal complexes: O:T.116, O:S.225 MG.32: 5 residues within 4Å: Chain P: Q.11, E.71, V.74 Chain Q: K.252 Ligands: GTP.31 No protein-ligand interaction detected (PLIP) MG.34: 4 residues within 4Å: Chain Q: Q.11, E.69, T.72 Ligands: G2P.33 No protein-ligand interaction detected (PLIP) MG.36: 5 residues within 4Å: Chain R: K.115, T.116, S.225, D.257 Ligands: ANP.35 2 PLIP interactions: 2 interactions with chain R Metal complexes: R:T.116, R:S.225 MG.38: 5 residues within 4Å: Chain S: Q.11, E.71, V.74 Chain T: K.252 Ligands: GTP.37 No protein-ligand interaction detected (PLIP) MG.40: 4 residues within 4Å: Chain T: Q.11, E.69, T.72 Ligands: G2P.39 No protein-ligand interaction detected (PLIP) MG.42: 5 residues within 4Å: Chain U: K.115, T.116, S.225, D.257 Ligands: ANP.41 2 PLIP interactions: 2 interactions with chain U Metal complexes: U:T.116, U:S.225 MG.44: 5 residues within 4Å: Chain V: Q.11, E.71, V.74 Chain W: K.252 Ligands: GTP.43 No protein-ligand interaction detected (PLIP) MG.46: 4 residues within 4Å: Chain W: Q.11, E.69, T.72 Ligands: G2P.45 No protein-ligand interaction detected (PLIP) MG.48: 5 residues within 4Å: Chain X: K.115, T.116, S.225, D.257 Ligands: ANP.47 2 PLIP interactions: 2 interactions with chain X Metal complexes: X:T.116, X:S.225 MG.50: 5 residues within 4Å: Chain Y: Q.11, E.71, V.74 Chain Z: K.252 Ligands: GTP.49 No protein-ligand interaction detected (PLIP) MG.52: 4 residues within 4Å: Chain Z: Q.11, E.69, T.72 Ligands: G2P.51 No protein-ligand interaction detected (PLIP) MG.54: 5 residues within 4Å: Chain 0: K.115, T.116, S.225, D.257 Ligands: ANP.53 2 PLIP interactions: 2 interactions with chain 0 Metal complexes: 0:T.116, 0:S.225

G2P.3: 28 residues within 4Å: Chain B: G.10, Q.11, C.12, Q.15, I.16, L.68, G.96, A.97, G.98, N.99, N.100, S.138, G.140, G.141, G.142, T.143, G.144, V.169, D.177, I.202, N.204, L.207, Y.222, L.225, N.226, V.229 Chain J: L.248 Ligands: MG.4 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:Q.11, B:C.12, B:A.97, B:G.98, B:N.99, B:S.138, B:T.143, B:G.144, B:D.177, B:D.177, B:D.177, B:N.204, B:N.204, B:Y.222, B:N.226, B:N.226 G2P.9: 28 residues within 4Å: Chain E: G.10, Q.11, C.12, Q.15, I.16, L.68, G.96, A.97, G.98, N.99, N.100, S.138, G.140, G.141, G.142, T.143, G.144, V.169, D.177, I.202, N.204, L.207, Y.222, L.225, N.226, V.229 Chain V: L.248 Ligands: MG.10 16 PLIP interactions: 16 interactions with chain E Hydrogen bonds: E:Q.11, E:C.12, E:A.97, E:G.98, E:N.99, E:S.138, E:T.143, E:G.144, E:D.177, E:D.177, E:D.177, E:N.204, E:N.204, E:Y.222, E:N.226, E:N.226 G2P.15: 28 residues within 4Å: Chain H: G.10, Q.11, C.12, Q.15, I.16, L.68, G.96, A.97, G.98, N.99, N.100, S.138, G.140, G.141, G.142, T.143, G.144, V.169, D.177, I.202, N.204, L.207, Y.222, L.225, N.226, V.229 Chain P: L.248 Ligands: MG.16 16 PLIP interactions: 16 interactions with chain H Hydrogen bonds: H:Q.11, H:C.12, H:A.97, H:G.98, H:N.99, H:S.138, H:T.143, H:G.144, H:D.177, H:D.177, H:D.177, H:N.204, H:N.204, H:Y.222, H:N.226, H:N.226 G2P.21: 27 residues within 4Å: Chain K: G.10, Q.11, C.12, Q.15, I.16, L.68, G.96, A.97, G.98, N.99, N.100, S.138, G.140, G.141, G.142, T.143, G.144, V.169, D.177, I.202, N.204, L.207, Y.222, L.225, N.226, V.229 Ligands: MG.22 16 PLIP interactions: 16 interactions with chain K Hydrogen bonds: K:Q.11, K:C.12, K:A.97, K:G.98, K:N.99, K:S.138, K:T.143, K:G.144, K:D.177, K:D.177, K:D.177, K:N.204, K:N.204, K:Y.222, K:N.226, K:N.226 G2P.27: 28 residues within 4Å: Chain A: L.248 Chain N: G.10, Q.11, C.12, Q.15, I.16, L.68, G.96, A.97, G.98, N.99, N.100, S.138, G.140, G.141, G.142, T.143, G.144, V.169, D.177, I.202, N.204, L.207, Y.222, L.225, N.226, V.229 Ligands: MG.28 16 PLIP interactions: 16 interactions with chain N Hydrogen bonds: N:Q.11, N:C.12, N:A.97, N:G.98, N:N.99, N:S.138, N:T.143, N:G.144, N:D.177, N:D.177, N:D.177, N:N.204, N:N.204, N:Y.222, N:N.226, N:N.226 G2P.33: 27 residues within 4Å: Chain Q: G.10, Q.11, C.12, Q.15, I.16, L.68, G.96, A.97, G.98, N.99, N.100, S.138, G.140, G.141, G.142, T.143, G.144, V.169, D.177, I.202, N.204, L.207, Y.222, L.225, N.226, V.229 Ligands: MG.34 16 PLIP interactions: 16 interactions with chain Q Hydrogen bonds: Q:Q.11, Q:C.12, Q:A.97, Q:G.98, Q:N.99, Q:S.138, Q:T.143, Q:G.144, Q:D.177, Q:D.177, Q:D.177, Q:N.204, Q:N.204, Q:Y.222, Q:N.226, Q:N.226 G2P.39: 28 residues within 4Å: Chain G: L.248 Chain T: G.10, Q.11, C.12, Q.15, I.16, L.68, G.96, A.97, G.98, N.99, N.100, S.138, G.140, G.141, G.142, T.143, G.144, V.169, D.177, I.202, N.204, L.207, Y.222, L.225, N.226, V.229 Ligands: MG.40 16 PLIP interactions: 16 interactions with chain T Hydrogen bonds: T:Q.11, T:C.12, T:A.97, T:G.98, T:N.99, T:S.138, T:T.143, T:G.144, T:D.177, T:D.177, T:D.177, T:N.204, T:N.204, T:Y.222, T:N.226, T:N.226 G2P.45: 27 residues within 4Å: Chain W: G.10, Q.11, C.12, Q.15, I.16, L.68, G.96, A.97, G.98, N.99, N.100, S.138, G.140, G.141, G.142, T.143, G.144, V.169, D.177, I.202, N.204, L.207, Y.222, L.225, N.226, V.229 Ligands: MG.46 16 PLIP interactions: 16 interactions with chain W Hydrogen bonds: W:Q.11, W:C.12, W:A.97, W:G.98, W:N.99, W:S.138, W:T.143, W:G.144, W:D.177, W:D.177, W:D.177, W:N.204, W:N.204, W:Y.222, W:N.226, W:N.226 G2P.51: 28 residues within 4Å: Chain D: L.248 Chain Z: G.10, Q.11, C.12, Q.15, I.16, L.68, G.96, A.97, G.98, N.99, N.100, S.138, G.140, G.141, G.142, T.143, G.144, V.169, D.177, I.202, N.204, L.207, Y.222, L.225, N.226, V.229 Ligands: MG.52 16 PLIP interactions: 16 interactions with chain Z Hydrogen bonds: Z:Q.11, Z:C.12, Z:A.97, Z:G.98, Z:N.99, Z:S.138, Z:T.143, Z:G.144, Z:D.177, Z:D.177, Z:D.177, Z:N.204, Z:N.204, Z:Y.222, Z:N.226, Z:N.226

ANP.5: 17 residues within 4Å: Chain C: R.16, R.18, P.19, T.111, G.112, C.113, G.114, K.115, T.116, Y.117, N.221, S.224, S.225, L.258, A.259, G.260 Ligands: MG.6 15 PLIP interactions: 15 interactions with chain C Hydrogen bonds: C:R.16, C:T.111, C:T.111, C:G.112, C:C.113, C:G.114, C:G.114, C:K.115, C:K.115, C:T.116, C:Y.117, C:S.225, C:A.259 pi-Stacking: C:Y.117, C:Y.117 ANP.11: 17 residues within 4Å: Chain F: R.16, R.18, P.19, T.111, G.112, C.113, G.114, K.115, T.116, Y.117, N.221, S.224, S.225, L.258, A.259, G.260 Ligands: MG.12 15 PLIP interactions: 15 interactions with chain F Hydrogen bonds: F:R.16, F:T.111, F:T.111, F:G.112, F:C.113, F:G.114, F:G.114, F:K.115, F:K.115, F:T.116, F:Y.117, F:S.225, F:A.259 pi-Stacking: F:Y.117, F:Y.117 ANP.17: 17 residues within 4Å: Chain I: R.16, R.18, P.19, T.111, G.112, C.113, G.114, K.115, T.116, Y.117, N.221, S.224, S.225, L.258, A.259, G.260 Ligands: MG.18 15 PLIP interactions: 15 interactions with chain I Hydrogen bonds: I:R.16, I:T.111, I:T.111, I:G.112, I:C.113, I:G.114, I:G.114, I:K.115, I:K.115, I:T.116, I:Y.117, I:S.225, I:A.259 pi-Stacking: I:Y.117, I:Y.117 ANP.23: 17 residues within 4Å: Chain L: R.16, R.18, P.19, T.111, G.112, C.113, G.114, K.115, T.116, Y.117, N.221, S.224, S.225, L.258, A.259, G.260 Ligands: MG.24 15 PLIP interactions: 15 interactions with chain L Hydrogen bonds: L:R.16, L:T.111, L:T.111, L:G.112, L:C.113, L:G.114, L:G.114, L:K.115, L:K.115, L:T.116, L:Y.117, L:S.225, L:A.259 pi-Stacking: L:Y.117, L:Y.117 ANP.29: 17 residues within 4Å: Chain O: R.16, R.18, P.19, T.111, G.112, C.113, G.114, K.115, T.116, Y.117, N.221, S.224, S.225, L.258, A.259, G.260 Ligands: MG.30 15 PLIP interactions: 15 interactions with chain O Hydrogen bonds: O:R.16, O:T.111, O:T.111, O:G.112, O:C.113, O:G.114, O:G.114, O:K.115, O:K.115, O:T.116, O:Y.117, O:S.225, O:A.259 pi-Stacking: O:Y.117, O:Y.117 ANP.35: 17 residues within 4Å: Chain R: R.16, R.18, P.19, T.111, G.112, C.113, G.114, K.115, T.116, Y.117, N.221, S.224, S.225, L.258, A.259, G.260 Ligands: MG.36 15 PLIP interactions: 15 interactions with chain R Hydrogen bonds: R:R.16, R:T.111, R:T.111, R:G.112, R:C.113, R:G.114, R:G.114, R:K.115, R:K.115, R:T.116, R:Y.117, R:S.225, R:A.259 pi-Stacking: R:Y.117, R:Y.117 ANP.41: 17 residues within 4Å: