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SMTL ID : 6cvn.1 (1 other biounit)

Model of synthetic tau (R2x4) bound to the microtubule

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-1-mer

Ligands

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1:	13 residues within 4Å: Chain A: Q.11, C.12, Q.15, N.99, S.138, G.141, G.142, T.143, G.144, D.177, N.204, Y.222, N.226 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:Q.11, A:Q.11, A:Q.11, A:N.99, A:S.138, A:G.142, A:T.143, A:T.143, A:T.143, A:T.143, A:G.144, A:D.177, A:D.177, A:N.204, A:N.204, A:N.226, A:N.226
GDP.4:	17 residues within 4Å: Chain B: L.248 Chain C: G.10, Q.11, C.12, Q.15, I.16, N.99, S.138, G.141, G.142, T.143, G.144, V.169, D.177, N.204, Y.222, N.226 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:Q.11, C:C.12, C:S.138, C:G.142, C:T.143, C:T.143, C:T.143, C:G.144, C:D.177, C:D.177, C:N.204, C:N.226, C:N.226, C:N.226

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2:

23 residues within 4Å:

Chain A: L.246, K.252
Chain B: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.143, G.144, T.145, G.146, I.171, T.179, E.183, N.206, Y.224, L.227, N.228
Ligands: MG.3

19 PLIP interactions:

17 interactions with chain B, 2 interactions with chain A

Hydrogen bonds: B:Q.11, B:A.12, B:D.98, B:A.99, B:A.100, B:N.101, B:N.101, B:S.140, B:G.144, B:T.145, B:T.145, B:G.146, B:E.183, B:N.206, B:N.206, B:N.228, B:N.228
Salt bridges: A:K.252, A:K.252

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3:

3 residues within 4Å:

Chain A: K.252
Chain B: D.98
Ligands: GTP.2

No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Kellogg, E.H. et al., Near-atomic model of microtubule-tau interactions. Science (2018)

Release Date

2018-05-23

Peptides

Tubulin beta chain: AC
Tubulin alpha-1B chain: B
Microtubule-associated protein tau: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Tubulin beta chain

Tubulin alpha-1B chain

Microtubule-associated protein tau

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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