SMTL ID : 7rxd.1

CryoEM structure of RBD domain of COVID-19 in complex with Legobody

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 14 residues within 4Å: Chain A: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, R.345 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.63, A:R.67, A:R.67, A:E.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, X. et al., Cryo-EM structure determination of small proteins by nanobody-binding scaffolds (Legobodies). Proc.Natl.Acad.Sci.USA (2021)

Release Date

2021-10-06

Peptides

Maltodextrin-binding protein,Immunoglobulin G-binding protein A,Immunoglobulin G-binding protein G: A
Fab_8D3_2 heavy chain: B
Fab_8D3_2 light chain: C
Nb_RBD: D
Spike protein S1: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
H

C
L

D
N

E
R

Maltodextrin-binding protein,Immunoglobulin G-binding protein A,Immunoglobulin G-binding protein G

Fab_8D3_2 heavy chain

Fab_8D3_2 light chain

Nb_RBD

Spike protein S1

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