SMTL ID : 7s0q.1

Head region of a complex of IGF-I with the ectodomain of a hybrid insulin receptor / type 1 insulin-like growth factor receptor

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 10 residues within 4Å: Chain A: N.105, I.106, T.107, S.128, L.129, I.130, L.131, D.132, L.206, R.222 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.132, A:D.132 NAG-NAG-BMA.3: 4 residues within 4Å: Chain A: N.214, D.215, T.216, A.217 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 5 residues within 4Å: Chain A: K.17, R.18, E.20, N.21 Ligands: BMA.4 No protein-ligand interaction detected (PLIP)

1 x BMA: beta-D-mannopyranose(Non-functional Binders)

BMA.4: 1 residues within 4Å: Ligands: NAG-NAG.2 No protein-ligand interaction detected (PLIP)

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 3 residues within 4Å: Chain A: Q.383, G.386, N.387 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.387, A:N.387 NAG.6: 6 residues within 4Å: Chain A: W.404, D.405, H.406, R.407, N.408, T.410 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.406, A:N.408 NAG.7: 4 residues within 4Å: Chain A: F.502, N.504, V.505, N.517 No protein-ligand interaction detected (PLIP) NAG.8: 1 residues within 4Å: Chain A: N.577 No protein-ligand interaction detected (PLIP) NAG.9: 7 residues within 4Å: Chain B: H.313, N.337, G.338, S.365, G.366, E.391, T.392 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.337 NAG.10: 6 residues within 4Å: Chain B: L.393, E.394, I.395, G.396, N.397, Y.398 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.393 Hydrogen bonds: B:G.396, B:N.397 NAG.11: 8 residues within 4Å: Chain B: E.355, S.380, R.383, Y.512, N.514, V.515, T.516, D.519 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.355, B:R.383, B:R.383

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, Y. et al., How insulin-like growth factor I binds to a hybrid insulin receptor type 1 insulin-like growth factor receptor. Structure (2022)

Release Date

2022-07-06

Peptides

Insulin-like growth factor 1 receptor: A
Insulin receptor: B
Insulin-like growth factor I: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

Insulin-like growth factor 1 receptor

Insulin receptor

Insulin-like growth factor I

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