SMTL ID : 7tm3.1

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

220 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 3 residues within 4Å: Chain O: Y.130, R.131 Chain r: G.1813 1 PLIP interactions: 1 interactions with chain O Metal complexes: O:Y.130 MG.2: 3 residues within 4Å: Chain O: R.62, N.64 Chain r: U.2589 No protein-ligand interaction detected (PLIP) MG.3: 3 residues within 4Å: Chain U: N.50 Chain r: U.2244, C.3025 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain Z: H.25, R.26, K.27 1 PLIP interactions: 1 interactions with chain Z Metal complexes: Z:H.25 MG.6: 4 residues within 4Å: Chain 5: G.55, T.70 Chain r: C.1975, G.1976 1 PLIP interactions: 1 interactions with chain 5 Metal complexes: 5:G.55 MG.8: 1 residues within 4Å: Chain 8: K.46 No protein-ligand interaction detected (PLIP) MG.12: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.13: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.14: 3 residues within 4Å: Chain J: R.16 Chain h: C.30, A.42 No protein-ligand interaction detected (PLIP) MG.15: 2 residues within 4Å: Chain J: K.154 Chain h: C.19 No protein-ligand interaction detected (PLIP) MG.16: 3 residues within 4Å: Chain h: A.54, A.55, G.56 No protein-ligand interaction detected (PLIP) MG.17: 5 residues within 4Å: Chain I: R.203, G.204, P.205 Chain h: G.64, G.65 1 PLIP interactions: 1 interactions with chain I Metal complexes: I:R.203 MG.18: 4 residues within 4Å: Chain F: R.95 Chain h: A.83 Chain r: C.1430, G.1431 No protein-ligand interaction detected (PLIP) MG.19: 4 residues within 4Å: Ligands: MG.156 Chain i: A.17 Chain r: U.348, A.372 No protein-ligand interaction detected (PLIP) MG.20: 2 residues within 4Å: Chain i: C.35 Chain r: G.58 No protein-ligand interaction detected (PLIP) MG.21: 1 residues within 4Å: Chain i: A.65 No protein-ligand interaction detected (PLIP) MG.22: 2 residues within 4Å: Chain i: U.51, A.52 No protein-ligand interaction detected (PLIP) MG.23: 3 residues within 4Å: Chain i: G.68, U.69, G.87 No protein-ligand interaction detected (PLIP) MG.24: 2 residues within 4Å: Chain i: C.19, A.20 No protein-ligand interaction detected (PLIP) MG.25: 5 residues within 4Å: Chain j: K.373, F.374, G.375 Chain r: U.3196, A.3234 1 PLIP interactions: 1 interactions with chain j Metal complexes: j:K.373 MG.26: 4 residues within 4Å: Chain I: N.14 Chain r: U.1399, G.1400, G.1401 No protein-ligand interaction detected (PLIP) MG.27: 2 residues within 4Å: Chain r: A.1241, G.1387 No protein-ligand interaction detected (PLIP) MG.28: 4 residues within 4Å: Chain P: N.7 Chain r: C.1225, G.1247, G.1248 No protein-ligand interaction detected (PLIP) MG.29: 5 residues within 4Å: Chain Z: K.7, G.18 Chain r: A.1386, G.1675, G.1676 1 PLIP interactions: 1 interactions with chain Z Metal complexes: Z:G.18 MG.30: 4 residues within 4Å: Chain r: G.882, A.883, G.1416, C.1417 No protein-ligand interaction detected (PLIP) MG.31: 3 residues within 4Å: Chain 8: Q.30 Chain r: A.1092, A.1093 No protein-ligand interaction detected (PLIP) MG.32: 4 residues within 4Å: Chain C: G.98, G.99 Chain r: G.350, C.352 No protein-ligand interaction detected (PLIP) MG.33: 3 residues within 4Å: Chain r: U.37, U.1211, U.2612 No protein-ligand interaction detected (PLIP) MG.34: 3 residues within 4Å: Chain r: A.38, G.40, C.41 No protein-ligand interaction detected (PLIP) MG.35: 5 residues within 4Å: Chain M: K.83, V.85 Chain r: U.43, A.44, U.45 No protein-ligand interaction detected (PLIP) MG.36: 5 residues within 4Å: Ligands: MG.52 Chain r: G.48, U.96, U.285, G.286 No protein-ligand interaction detected (PLIP) MG.37: 1 residues within 4Å: Chain r: A.51 No protein-ligand interaction detected (PLIP) MG.38: 1 residues within 4Å: Chain r: A.56 No protein-ligand interaction detected (PLIP) MG.39: 3 residues within 4Å: Chain r: A.60, A.61, A.62 No protein-ligand interaction detected (PLIP) MG.40: 3 residues within 4Å: Chain r: A.62, C.326, U.327 No protein-ligand interaction detected (PLIP) MG.41: 4 residues within 4Å: Chain r: A.84, G.85, G.941, C.942 No protein-ligand interaction detected (PLIP) MG.42: 1 residues within 4Å: Chain r: A.101 No protein-ligand interaction detected (PLIP) MG.43: 2 residues within 4Å: Chain r: A.105, A.106 No protein-ligand interaction detected (PLIP) MG.44: 3 residues within 4Å: Chain r: C.112, C.155, G.156 No protein-ligand interaction detected (PLIP) MG.45: 2 residues within 4Å: Chain r: A.113, G.114 No protein-ligand interaction detected (PLIP) MG.46: 3 residues within 4Å: Ligands: MG.184 Chain r: A.192, G.234 No protein-ligand interaction detected (PLIP) MG.47: 2 residues within 4Å: Chain r: A.229, G.230 No protein-ligand interaction detected (PLIP) MG.48: 1 residues within 4Å: Chain r: U.225 No protein-ligand interaction detected (PLIP) MG.49: 1 residues within 4Å: Chain r: C.276 No protein-ligand interaction detected (PLIP) MG.50: 4 residues within 4Å: Chain M: Q.91 Chain d: G.47 Chain r: U.281, G.282 No protein-ligand interaction detected (PLIP) MG.51: 3 residues within 4Å: Chain r: U.45, U.284, U.285 No protein-ligand interaction detected (PLIP) MG.52: 4 residues within 4Å: Ligands: MG.36 Chain r: A.47, G.48, U.285 No protein-ligand interaction detected (PLIP) MG.53: 2 residues within 4Å: Chain r: U.2922, U.2923 No protein-ligand interaction detected (PLIP) MG.54: 1 residues within 4Å: Ligands: MG.195 No protein-ligand interaction detected (PLIP) MG.55: 3 residues within 4Å: Chain r: C.344, C.345, G.1735 No protein-ligand interaction detected (PLIP) MG.56: 2 residues within 4Å: Chain r: G.350, A.353 No protein-ligand interaction detected (PLIP) MG.57: 2 residues within 4Å: Ligands: MG.157 Chain r: A.1724 No protein-ligand interaction detected (PLIP) MG.58: 4 residues within 4Å: Chain r: A.401, A.404, G.1722, G.1723 No protein-ligand interaction detected (PLIP) MG.59: 4 residues within 4Å: Chain r: A.404, G.409, U.410, G.1723 No protein-ligand interaction detected (PLIP) MG.60: 4 residues within 4Å: Chain r: C.408, G.409, U.410, G.411 No protein-ligand interaction detected (PLIP) MG.61: 5 residues within 4Å: Chain i: A.9, G.10, C.11 Chain r: G.417, U.418 No protein-ligand interaction detected (PLIP) MG.62: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.63: 4 residues within 4Å: Chain r: C.1224, G.1670, A.1671, G.1672 No protein-ligand interaction detected (PLIP) MG.64: 2 residues within 4Å: Chain r: A.1674, G.1675 No protein-ligand interaction detected (PLIP) MG.65: 3 residues within 4Å: Chain r: C.1157, A.1759, A.2190 No protein-ligand interaction detected (PLIP) MG.66: 2 residues within 4Å: Chain r: U.1761, A.1762 No protein-ligand interaction detected (PLIP) MG.67: 3 residues within 4Å: Chain r: U.1761, C.1785, C.2210 No protein-ligand interaction detected (PLIP) MG.68: 3 residues within 4Å: Chain r: G.1792, A.1793, C.2177 No protein-ligand interaction detected (PLIP) MG.69: 3 residues within 4Å: Chain r: C.1802, C.1803, A.1820 No protein-ligand interaction detected (PLIP) MG.70: 3 residues within 4Å: Chain O: R.127 Chain r: C.1814, A.1815 No protein-ligand interaction detected (PLIP) MG.71: 4 residues within 4Å: Chain r: C.1837, C.1838, C.1901, G.1902 No protein-ligand interaction detected (PLIP) MG.72: 4 residues within 4Å: Ligands: MG.211 Chain r: A.1905, G.1906, G.1908 No protein-ligand interaction detected (PLIP) MG.73: 2 residues within 4Å: Chain r: G.2069, A.2070 No protein-ligand interaction detected (PLIP) MG.74: 4 residues within 4Å: Chain 5: R.10 Chain r: G.1794, A.2175, C.2176 No protein-ligand interaction detected (PLIP) MG.75: 3 residues within 4Å: Chain r: A.2181, G.2219, U.2220 No protein-ligand interaction detected (PLIP) MG.76: 2 residues within 4Å: Chain a: K.48 Chain r: C.2184 No protein-ligand interaction detected (PLIP) MG.77: 7 residues within 4Å: Chain 8: T.5 Chain O: G.134 Chain r: G.1158, A.1159, A.1197, G.2185, C.2186 No protein-ligand interaction detected (PLIP) MG.78: 4 residues within 4Å: Chain r: A.2236, A.2237, G.2240, G.2536 No protein-ligand interaction detected (PLIP) MG.79: 3 residues within 4Å: Chain r: C.2248, A.2249, A.2250 No protein-ligand interaction detected (PLIP) MG.80: 3 residues within 4Å: Chain r: A.2262, G.2270, A.2271 No protein-ligand interaction detected (PLIP) MG.81: 3 residues within 4Å: Chain r: U.2328, C.2329, U.2519 No protein-ligand interaction detected (PLIP) MG.82: 3 residues within 4Å: Chain r: G.2331, C.2333, U.2334 No protein-ligand interaction detected (PLIP) MG.83: 5 residues within 4Å: Chain r: U.2338, A.2339, A.2340, U.2341, U.2342 No protein-ligand interaction detected (PLIP) MG.84: 5 residues within 4Å: Chain r: C.2398, U.2401, G.2402, U.2442, A.2445 No protein-ligand interaction detected (PLIP) MG.85: 5 residues within 4Å: Chain r: G.2386, A.2444, A.2445, C.2446, U.2515 No protein-ligand interaction detected (PLIP) MG.86: 1 residues within 4Å: Chain r: G.3112 No protein-ligand interaction detected (PLIP) MG.87: 5 residues within 4Å: Chain r: U.2475, A.2476, G.2477, C.2478, G.2512 No protein-ligand interaction detected (PLIP) MG.88: 1 residues within 4Å: Chain r: A.2480 No protein-ligand interaction detected (PLIP) MG.89: 6 residues within 4Å: Chain r: U.2394, G.2395, C.2396, A.2444, A.2513, A.2514 No protein-ligand interaction detected (PLIP) MG.90: 3 residues within 4Å: Chain r: A.1755, U.2550, A.2591 No protein-ligand interaction detected (PLIP) MG.91: 6 residues within 4Å: Chain r: A.885, C.886, A.2573, A.2574, C.2575, G.2576 No protein-ligand interaction detected (PLIP) MG.92: 3 residues within 4Å: Chain r: U.1236, C.1237, G.2610 No protein-ligand interaction detected (PLIP) MG.93: 3 residues within 4Å: Chain r: A.2761, C.2762, U.2763 No protein-ligand interaction detected (PLIP) MG.94: 4 residues within 4Å: Chain r: G.40, C.41, U.2612, G.2613 No protein-ligand interaction detected (PLIP) MG.95: 2 residues within 4Å: Chain r: G.2613, A.2614 No protein-ligand interaction detected (PLIP) MG.96: 1 residues within 4Å: Chain r: G.2752 No protein-ligand interaction detected (PLIP) MG.97: 4 residues within 4Å: Chain A: P.206, P.210 Chain r: U.2617, G.2753 No protein-ligand interaction detected (PLIP) MG.98: 3 residues within 4Å: Chain r: G.2619, A.2620, C.2621 No protein-ligand interaction detected (PLIP) MG.99: 4 residues within 4Å: Chain r: U.35, G.1085, G.2756, U.2757 No protein-ligand interaction detected (PLIP) MG.100: 3 residues within 4Å: Chain r: U.1271, U.2779, C.2780 No protein-ligand interaction detected (PLIP) MG.101: 4 residues within 4Å: Chain r: A.2782, A.2783, C.2784, G.2786 No protein-ligand interaction detected (PLIP) MG.102: 5 residues within 4Å: Chain r: G.2804, G.2805, G.2852, G.2900, C.2901 No protein-ligand interaction detected (PLIP) MG.103: 3 residues within 4Å: Chain D: A.32 Chain r: A.2808, A.2893 No protein-ligand interaction detected (PLIP) MG.104: 2 residues within 4Å: Chain r: C.2810, A.2850 No protein-ligand interaction detected (PLIP) MG.105: 1 residues within 4Å: Chain r: A.2886 No protein-ligand interaction detected (PLIP) MG.106: 3 residues within 4Å: Chain r: A.2954, C.2955, A.3102 No protein-ligand interaction detected (PLIP) MG.107: 4 residues within 4Å: Chain A: N.205 Chain r: G.1192, G.1200, G.3103 No protein-ligand interaction detected (PLIP) MG.108: 5 residues within 4Å: Chain A: A.203, N.205 Chain r: A.1191, G.1192, A.3104 No protein-ligand interaction detected (PLIP) MG.109: 3 residues within 4Å: Chain r: A.3102, A.3104, A.3122 No protein-ligand interaction detected (PLIP) MG.110: 2 residues within 4Å: Chain r: A.2603, G.3017 No protein-ligand interaction detected (PLIP) MG.111: 6 residues within 4Å: Chain r: G.2962, A.2963, U.2964, C.3012, C.3013, U.3014 No protein-ligand interaction detected (PLIP) MG.112: 4 residues within 4Å: Chain r: G.882, G.2962, A.2963, U.3014 No protein-ligand interaction detected (PLIP) MG.113: 3 residues within 4Å: Chain r: G.2969, G.2970, U.3011 No protein-ligand interaction detected (PLIP) MG.114: 2 residues within 4Å: Chain r: C.2986, G.2987 No protein-ligand interaction detected (PLIP) MG.115: 1 residues within 4Å: Chain r: A.1407 No protein-ligand interaction detected (PLIP) MG.116: 4 residues within 4Å: Chain r: A.2598, A.2599, U.3019, G.3020 No protein-ligand interaction detected (PLIP) MG.117: 4 residues within 4Å: Chain r: A.2602, A.3018, U.3019, G.3020 No protein-ligand interaction detected (PLIP) MG.118: 1 residues within 4Å: Chain r: A.3048 No protein-ligand interaction detected (PLIP) MG.119: 3 residues within 4Å: Chain r: G.2243, U.2244, G.3064 No protein-ligand interaction detected (PLIP) MG.120: 4 residues within 4Å: Chain r: A.2242, G.2243, U.2244, A.3065 No protein-ligand interaction detected (PLIP) MG.121: 2 residues within 4Å: Chain r: C.2530, U.3066 No protein-ligand interaction detected (PLIP) MG.122: 4 residues within 4Å: Chain r: G.3020, G.3091, A.3092, U.3126 No protein-ligand interaction detected (PLIP) MG.123: 3 residues within 4Å: Chain r: C.3088, G.3089, U.3090 No protein-ligand interaction detected (PLIP) MG.124: 4 residues within 4Å: Chain j: H.3, S.7 Chain r: G.3083, G.3084 No protein-ligand interaction detected (PLIP) MG.125: 3 residues within 4Å: Chain r: U.3032, A.3033, C.3055 No protein-ligand interaction detected (PLIP) MG.126: 5 residues within 4Å: Chain r: G.2595, G.2596, U.3090, G.3091, A.3092 No protein-ligand interaction detected (PLIP) MG.127: 5 residues within 4Å: Chain j: K.243, H.245 Chain r: U.1150, G.1151, U.3095 No protein-ligand interaction detected (PLIP) MG.128: 3 residues within 4Å: Chain r: G.3096, G.3097, G.3098 No protein-ligand interaction detected (PLIP) MG.129: 2 residues within 4Å: Chain r: G.2512, G.3107 No protein-ligand interaction detected (PLIP) MG.130: 3 residues within 4Å: Chain r: U.1150, G.1151, C.1153 No protein-ligand interaction detected (PLIP) MG.131: 1 residues within 4Å: Chain r: G.1154 No protein-ligand interaction detected (PLIP) MG.132: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.133: 2 residues within 4Å: Chain r: C.3273, A.3274 No protein-ligand interaction detected (PLIP) MG.134: 2 residues within 4Å: Chain r: U.3254, A.3256 No protein-ligand interaction detected (PLIP) MG.135: 2 residues within 4Å: Chain r: G.3219, A.3220 No protein-ligand interaction detected (PLIP) MG.136: 4 residues within 4Å: Chain 4: K.52 Chain r: U.3314, U.3315, U.3426 No protein-ligand interaction detected (PLIP) MG.137: 3 residues within 4Å: Chain F: N.98 Chain r: G.1431, A.1432 No protein-ligand interaction detected (PLIP) MG.138: 4 residues within 4Å: Chain r: C.879, U.1215, A.1238, A.2963 No protein-ligand interaction detected (PLIP) MG.139: 4 residues within 4Å: Chain r: G.1239, G.1389, G.1390, A.2963 No protein-ligand interaction detected (PLIP) MG.140: 3 residues within 4Å: Chain Z: K.24 Chain r: C.879, U.1218 No protein-ligand interaction detected (PLIP) MG.141: 3 residues within 4Å: Chain r: C.316, G.2924, G.2925 No protein-ligand interaction detected (PLIP) MG.142: 3 residues within 4Å: Ligands: MG.144 Chain r: U.410, G.411 No protein-ligand interaction detected (PLIP) MG.143: 5 residues within 4Å: Ligands: MG.156 Chain r: A.347, U.348, A.372, G.373 No protein-ligand interaction detected (PLIP) MG.144: 4 residues within 4Å: Ligands: MG.142 Chain r: G.409, U.410, G.411 No protein-ligand interaction detected (PLIP) MG.145: 2 residues within 4Å: Chain r: A.895, G.896 No protein-ligand interaction detected (PLIP) MG.146: 4 residues within 4Å: Chain r: G.889, G.890, C.2561, A.2562 No protein-ligand interaction detected (PLIP) MG.147: 2 residues within 4Å: Chain r: C.886, G.2577 No protein-ligand interaction detected (PLIP) MG.148: 2 residues within 4Å: Chain r: G.2596, A.3092 No protein-ligand interaction detected (PLIP) MG.149: 2 residues within 4Å: Chain r: A.1755, G.1756 No protein-ligand interaction detected (PLIP) MG.150: 6 residues within 4Å: Chain r: U.880, G.882, A.1228, G.1229, G.1416, C.1417 No protein-ligand interaction detected (PLIP) MG.151: 5 residues within 4Å: Chain K: S.4, N.6 Chain r: G.1071, C.1384, U.1385 No protein-ligand interaction detected (PLIP) MG.152: 4 residues within 4Å: Chain r: G.2474, G.2512, A.2513, U.2515 No protein-ligand interaction detected (PLIP) MG.153: 3 residues within 4Å: Chain r: A.2603, G.2604, G.3017 No protein-ligand interaction detected (PLIP) MG.154: 2 residues within 4Å: Chain r: G.1792, A.2179 No protein-ligand interaction detected (PLIP) MG.155: 3 residues within 4Å: Chain r: U.2218, U.2221, G.2222 No protein-ligand interaction detected (PLIP) MG.156: 5 residues within 4Å: Ligands: MG.19, MG.143 Chain r: A.347, U.348, A.372 No protein-ligand interaction detected (PLIP) MG.157: 3 residues within 4Å: Ligands: MG.57 Chain r: G.1723, A.1724 No protein-ligand interaction detected (PLIP) MG.158: 4 residues within 4Å: Chain r: G.1085, G.1184, A.2614, G.2615 No protein-ligand interaction detected (PLIP) MG.159: 6 residues within 4Å: Chain r: G.1213, C.1214, C.1237, A.1238, G.1239, U.2611 No protein-ligand interaction detected (PLIP) MG.160: 5 residues within 4Å: Chain 0: S.4 Chain r: G.1229, G.1389, G.1390, G.1391 No protein-ligand interaction detected (PLIP) MG.161: 2 residues within 4Å: Chain r: A.1273, A.1274 No protein-ligand interaction detected (PLIP) MG.162: 1 residues within 4Å: Chain r: U.2975 No protein-ligand interaction detected (PLIP) MG.163: 2 residues within 4Å: Chain N: R.74 Chain r: C.3281 No protein-ligand interaction detected (PLIP) MG.164: 1 residues within 4Å: Chain r: G.1240 No protein-ligand interaction detected (PLIP) MG.165: 5 residues within 4Å: Chain r: U.900, C.901, G.1075, A.1077, C.1078 No protein-ligand interaction detected (PLIP) MG.166: 2 residues within 4Å: Chain r: U.909, A.1067 No protein-ligand interaction detected (PLIP) MG.167: 2 residues within 4Å: Chain r: C.1080, A.1209 No protein-ligand interaction detected (PLIP) MG.168: 3 residues within 4Å: Chain r: G.1081, A.1082, G.1210 No protein-ligand interaction detected (PLIP) MG.169: 5 residues within 4Å: Chain 3: D.42 Chain r: U.878, A.883, A.884, A.887 1 PLIP interactions: 1 interactions with chain 3 Metal complexes: 3:D.42 MG.170: 3 residues within 4Å: Chain r: U.1147, U.2342, A.2343 No protein-ligand interaction detected (PLIP) MG.171: 3 residues within 4Å: Chain r: U.2953, A.2954, A.3115 No protein-ligand interaction detected (PLIP) MG.172: 3 residues within 4Å: Chain r: G.2604, A.2605, A.2959 No protein-ligand interaction detected (PLIP) MG.173: 4 residues within 4Å: Chain P: H.6 Chain r: C.1225, A.1226, G.1672 No protein-ligand interaction detected (PLIP) MG.174: 4 residues within 4Å: Chain r: C.1738, A.1739, G.1740, C.1743 No protein-ligand interaction detected (PLIP) MG.175: 3 residues within 4Å: Chain r: U.1441, U.1442, C.1603 No protein-ligand interaction detected (PLIP) MG.176: 2 residues within 4Å: Chain r: C.1434, G.1670 No protein-ligand interaction detected (PLIP) MG.177: 3 residues within 4Å: Chain W: R.56 Chain r: C.14, A.15 No protein-ligand interaction detected (PLIP) MG.178: 3 residues within 4Å: Chain r: U.878, C.879, G.1216 No protein-ligand interaction detected (PLIP) MG.179: 2 residues within 4Å: Chain r: A.1752, C.3130 No protein-ligand interaction detected (PLIP) MG.180: 2 residues within 4Å: Chain r: G.1414, C.1415 No protein-ligand interaction detected (PLIP) MG.181: 2 residues within 4Å: Chain r: C.1417, G.1672 No protein-ligand interaction detected (PLIP) MG.182: 3 residues within 4Å: Chain r: A.341, C.927, G.928 No protein-ligand interaction detected (PLIP) MG.183: 2 residues within 4Å: Chain r: A.237, G.238 No protein-ligand interaction detected (PLIP) MG.184: 4 residues within 4Å: Ligands: MG.46 Chain r: A.191, G.235, U.236 No protein-ligand interaction detected (PLIP) MG.185: 2 residues within 4Å: Chain r: C.214, G.231 No protein-ligand interaction detected (PLIP) MG.186: 1 residues within 4Å: Chain r: G.207 No protein-ligand interaction detected (PLIP) MG.187: 1 residues within 4Å: Chain r: G.1133 No protein-ligand interaction detected (PLIP) MG.188: 2 residues within 4Å: Chain r: U.1097, U.2336 No protein-ligand interaction detected (PLIP) MG.189: 3 residues within 4Å: Chain A: N.194 Chain r: U.1097, G.1098 No protein-ligand interaction detected (PLIP) MG.190: 4 residues within 4Å: Chain r: A.1092, A.1093, C.1094, U.1095 No protein-ligand interaction detected (PLIP) MG.191: 3 residues within 4Å: Chain r: G.2144, G.2145, G.2146 No protein-ligand interaction detected (PLIP) MG.192: 2 residues within 4Å: Chain r: U.31, G.48 No protein-ligand interaction detected (PLIP) MG.193: 4 residues within 4Å: Chain r: G.32, A.33, G.48, C.283 No protein-ligand interaction detected (PLIP) MG.194: 2 residues within 4Å: Chain r: A.65, U.321 No protein-ligand interaction detected (PLIP) MG.195: 1 residues within 4Å: Ligands: MG.54 No protein-ligand interaction detected (PLIP) MG.196: 1 residues within 4Å: Chain r: A.101 No protein-ligand interaction detected (PLIP) MG.197: 3 residues within 4Å: Chain r: G.91, C.92, G.93 No protein-ligand interaction detected (PLIP) MG.198: 2 residues within 4Å: Chain r: C.1393, A.1407 No protein-ligand interaction detected (PLIP) MG.199: 5 residues within 4Å: Chain r: A.887, C.888, A.2598, A.3018, U.3019 No protein-ligand interaction detected (PLIP) MG.200: 4 residues within 4Å: Chain r: C.1234, C.1235, G.2946, A.2947 No protein-ligand interaction detected (PLIP) MG.201: 5 residues within 4Å: Chain r: G.1423, A.1424, U.1425, G.1426, A.1475 No protein-ligand interaction detected (PLIP) MG.202: 3 residues within 4Å: Chain 4: L.18 Chain r: G.1423, C.1451 No protein-ligand interaction detected (PLIP) MG.203: 3 residues within 4Å: Chain r: C.871, G.872, A.873 No protein-ligand interaction detected (PLIP) MG.204: 2 residues within 4Å: Chain r: G.2578, C.2579 No protein-ligand interaction detected (PLIP) MG.205: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.206: 1 residues within 4Å: Chain r: G.1440 No protein-ligand interaction detected (PLIP) MG.207: 1 residues within 4Å: Chain r: G.2366 No protein-ligand interaction detected (PLIP) MG.208: 2 residues within 4Å: Chain r: U.2031, G.2032 No protein-ligand interaction detected (PLIP) MG.209: 4 residues within 4Å: Chain r: A.2087, A.2088, G.2090, C.2091 No protein-ligand interaction detected (PLIP) MG.210: 1 residues within 4Å: Chain r: U.1911 No protein-ligand interaction detected (PLIP) MG.211: 7 residues within 4Å: Ligands: MG.72 Chain r: G.1835, C.1837, A.1903, G.1906, G.1907, G.1908 No protein-ligand interaction detected (PLIP) MG.212: 2 residues within 4Å: Chain i: U.110 Chain r: G.1902 No protein-ligand interaction detected (PLIP) MG.213: 4 residues within 4Å: Chain r: G.1844, A.1845, C.1857, G.1858 No protein-ligand interaction detected (PLIP) MG.214: 6 residues within 4Å: Chain r: C.2623, U.2624, G.2751, G.2752, G.2753, G.2754 No protein-ligand interaction detected (PLIP) MG.215: 3 residues within 4Å: Chain r: A.2236, A.2237, G.2238 No protein-ligand interaction detected (PLIP) MG.216: 2 residues within 4Å: Chain r: U.3201, G.3202 No protein-ligand interaction detected (PLIP) MG.217: 3 residues within 4Å: Chain r: A.2553, G.2554, C.2555 No protein-ligand interaction detected (PLIP) MG.218: 4 residues within 4Å: Chain r: C.1138, C.1139, U.1168, C.1169 No protein-ligand interaction detected (PLIP) MG.219: 4 residues within 4Å: Chain r: G.1136, U.1137, C.1138, C.1169 No protein-ligand interaction detected (PLIP) MG.220: 1 residues within 4Å: Chain r: G.3200 No protein-ligand interaction detected (PLIP) MG.221: 5 residues within 4Å: Ligands: MG.222 Chain r: G.3200, U.3201, G.3235, C.3236 No protein-ligand interaction detected (PLIP) MG.222: 1 residues within 4Å: Ligands: MG.221 No protein-ligand interaction detected (PLIP) MG.223: 2 residues within 4Å: Chain r: C.3172, G.3173 No protein-ligand interaction detected (PLIP) MG.224: 2 residues within 4Å: Chain i: C.19 Chain r: A.347 No protein-ligand interaction detected (PLIP) MG.225: 3 residues within 4Å: Chain i: A.9 Chain r: U.1704, A.1705 No protein-ligand interaction detected (PLIP)

5 x ZN: ZINC ION(Non-covalent)

ZN.5: 6 residues within 4Å: Chain 5: S.44, C.46, V.48, C.49, C.83, C.86 4 PLIP interactions: 4 interactions with chain 5 Metal complexes: 5:C.46, 5:C.49, 5:C.83, 5:C.86 ZN.7: 8 residues within 4Å: Chain 8: C.19, R.21, C.22, S.24, C.34, K.36, C.37, Y.39 4 PLIP interactions: 4 interactions with chain 8 Metal complexes: 8:C.19, 8:C.22, 8:C.34, 8:C.37 ZN.9: 6 residues within 4Å: Chain b: C.70, C.73, A.75, C.84, C.89, T.92 4 PLIP interactions: 4 interactions with chain b Metal complexes: b:C.70, b:C.73, b:C.84, b:C.89 ZN.10: 4 residues within 4Å: Chain d: C.12, H.21, C.72, S.79 3 PLIP interactions: 3 interactions with chain d Metal complexes: d:C.12, d:H.21, d:C.72 ZN.11: 7 residues within 4Å: Chain e: C.39, F.41, C.42, C.57, S.59, C.60, K.62 3 PLIP interactions: 3 interactions with chain e Metal complexes: e:C.39, e:C.42, e:C.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smalinskaite, L. et al., Mechanism of an intramembrane chaperone for multipass membrane proteins. Nature (2022)

Release Date

2022-10-19

Peptides

uL2: A
Nascent chain: B
uL4: C
uL18: D
eL6: E
uL30: F
eL8: G
uL6: H
uL16: I
uL5: J
eL13: K
eL14: L
eL15: M
uL13: N
uL22: O
eL18: P
eL19: Q
eL20: R
eL21: S
eL22: T
uL14: U
eL24: V
uL23: W
uL24: X
eL27: Y
uL15: Z
eL29: 0
eL30: 1
eL31: 2
eL32: 3
eL33: 4
eL34: 5
uL29: 6
eL36: 7
eL37: 8
eL38: 9
eL39: a
eL40: b
eL41: c
eL42: d
eL43: e
eL28: g
uL3: j
Protein transport protein Sec61 subunit alpha isoform 1: k
Protein transport protein Sec61 subunit beta: l
Protein transport protein Sec61 gamma: m
Coiled-coil domain containing 47: n
PAT complex subunit Asterix: o
Nicalin: p
Transmembrane protein 147: q

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
L

L
M

M
N

N
O

O
P

P
Q

Q
R

R
S

S
T

T
U

U
V

V
W

W
X

X
Y

Y
Z

Z
a

0
b

1
c

2
d

3
e

4
f

5
g

6
h

7
i

8
j

9
k

a
l

b
m

c
n

d
o

e
p

g
r

j
w

k
1

l
2

m
3

n
4

o
5

p
7

q
6

Membrane

We predict this structure to be a membrane protein.
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uL2

Nascent chain

uL4

uL18

eL6

uL30

eL8

uL6

uL16

uL5

eL13

eL14

eL15

uL13

uL22

eL18

eL19

eL20

eL21

eL22

uL14

eL24

uL23

uL24

eL27

uL15

eL29

eL30

eL31

eL32

eL33

eL34

uL29

eL36

eL37

eL38

eL39

eL40

eL41

eL42

eL43

eL28

uL3

Protein transport protein Sec61 subunit alpha isoform 1

Protein transport protein Sec61 subunit beta

Protein transport protein Sec61 gamma

Coiled-coil domain containing 47

PAT complex subunit Asterix

Nicalin

Transmembrane protein 147

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