SMTL ID : 8apa.1

rotational state 1a of the Trypanosoma brucei mitochondrial ATP synthase dimer

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-1-1-1-3-2-2-1-10-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 15 residues within 4Å: Chain A: F.187, R.208, Q.209, T.210, G.211, K.212, T.213, S.214, F.394, R.399, P.400, Q.464, K.465 Chain D: Y.394 Ligands: MG.2 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:Q.209, A:T.210, A:G.211, A:K.212, A:T.213, A:T.213, A:S.214, A:S.214, A:R.399, A:R.399, A:K.465 Salt bridges: A:K.212, A:K.212 pi-Cation interactions: A:K.465, A:K.465 ATP.3: 18 residues within 4Å: Chain B: F.187, R.208, Q.209, T.210, G.211, K.212, T.213, S.214, Q.245, F.394, R.399, P.400, Q.464, K.465, R.582 Chain E: R.382, D.385 Ligands: MG.4 17 PLIP interactions: 16 interactions with chain B, 1 interactions with chain E Hydrogen bonds: B:Q.209, B:T.210, B:T.210, B:G.211, B:K.212, B:T.213, B:T.213, B:S.214, B:S.214, B:R.399, B:Q.464, B:K.465, E:D.385 Salt bridges: B:K.212, B:K.212 pi-Cation interactions: B:K.465, B:K.465 ATP.5: 17 residues within 4Å: Chain C: F.187, R.208, Q.209, T.210, G.211, K.212, T.213, S.214, F.394, R.399, P.400, Q.464, K.465 Chain F: R.382, D.385, Y.394 Ligands: MG.6 15 PLIP interactions: 15 interactions with chain C Hydrogen bonds: C:Q.209, C:T.210, C:T.210, C:G.211, C:K.212, C:T.213, C:S.214, C:S.214, C:R.399, C:Q.464, C:K.465 Salt bridges: C:K.212, C:K.212 pi-Cation interactions: C:K.465, C:K.465 ATP.9: 20 residues within 4Å: Chain B: I.380, S.381, V.408, R.410 Chain F: A.185, G.186, V.187, G.188, K.189, T.190, V.191, R.216, Y.337, Y.371, P.372, F.444, A.447, F.450, T.451 Ligands: MG.10 17 PLIP interactions: 12 interactions with chain F, 5 interactions with chain B Hydrogen bonds: F:G.186, F:V.187, F:G.188, F:K.189, F:T.190, F:T.190, F:V.191, B:S.381, B:S.381 Salt bridges: F:K.189, F:K.189, F:R.216, B:R.410, B:R.410, B:R.410 pi-Stacking: F:Y.371, F:Y.371

5 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.213, D.306 Ligands: ATP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.213 MG.4: 4 residues within 4Å: Chain B: T.213, N.249, D.306 Ligands: ATP.3 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.213 MG.6: 3 residues within 4Å: Chain C: T.213, D.306 Ligands: ATP.5 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:T.213 MG.8: 5 residues within 4Å: Chain C: R.410 Chain D: T.190, R.216, E.219 Ligands: ADP.7 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:T.190 MG.10: 5 residues within 4Å: Chain F: T.190, E.215, R.216, E.219 Ligands: ATP.9 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:T.190

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.7: 17 residues within 4Å: Chain C: V.408, S.409, R.410 Chain D: G.184, A.185, G.186, V.187, G.188, K.189, T.190, V.191, Y.371, F.444, A.447, F.450, T.451 Ligands: MG.8 11 PLIP interactions: 9 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:G.186, D:V.187, D:G.188, D:K.189, D:T.190, D:T.190, D:V.191 Salt bridges: D:K.189, C:R.410, C:R.410 pi-Stacking: D:Y.371

1 x UTP: URIDINE 5'-TRIPHOSPHATE(Non-covalent)

UTP.11: 14 residues within 4Å: Chain G: N.208, E.209, E.210 Chain H: N.76, Y.79, K.88 Chain P: R.82 Chain Q: V.78, R.82 Chain T: R.82 Chain U: R.82 Chain V: R.82 Chain W: R.82 Chain X: R.82 15 PLIP interactions: 2 interactions with chain U, 1 interactions with chain W, 1 interactions with chain T, 2 interactions with chain Q, 5 interactions with chain H, 1 interactions with chain X, 2 interactions with chain V, 1 interactions with chain P Salt bridges: U:R.82, U:R.82, W:R.82, H:K.88, H:K.88, H:K.88, X:R.82, V:R.82, V:R.82 Hydrogen bonds: T:R.82, Q:R.82, H:N.76, H:Y.79, P:R.82 pi-Cation interactions: Q:R.82

14 x CDL: CARDIOLIPIN(Non-covalent)

CDL.12: 28 residues within 4Å: Chain L: H.11, N.15, V.16, Y.18, F.19, A.22, W.23, V.26 Chain N: R.72, K.106, V.109, L.110, I.113, V.116, L.117, I.122 Chain Z: V.176, F.177, F.181 Ligands: PEE.13, CDL.31, PEE.32, CDL.34 Chain a: L.16, A.54, V.55, T.58, K.59 14 PLIP interactions: 6 interactions with chain N, 6 interactions with chain L, 1 interactions with chain a, 1 interactions with chain Z Hydrophobic interactions: N:L.110, N:I.113, L:Y.18, L:F.19, L:F.19, L:A.22, Z:F.177 Salt bridges: N:R.72, N:K.106, N:K.106, N:K.106 Hydrogen bonds: L:N.15, L:Y.18, a:K.59 CDL.14: 30 residues within 4Å: Chain 0: S.39, M.42, V.43, Y.46, W.51, M.54 Chain 6: W.38 Chain Z: F.2, L.3, F.4, F.5, F.6, C.7, F.10, R.13 Ligands: CDL.22, Q7G.33, CDL.36 Chain b: Q.114, G.117, Y.118, V.120, A.121, Y.124, L.125, H.144, I.146, M.147 Chain e: L.27, L.29 12 PLIP interactions: 7 interactions with chain Z, 4 interactions with chain b, 1 interactions with chain 0 Hydrophobic interactions: Z:F.2, Z:F.6, Z:F.10, b:Y.118, b:A.121, b:Y.124, 0:M.42 Hydrogen bonds: Z:F.5, Z:C.7, b:Y.118 Salt bridges: Z:R.13, Z:R.13 CDL.15: 44 residues within 4Å: Chain 0: F.49, F.50 Chain 2: H.100, C.101, G.103, A.104, A.107, T.108, Y.111, F.115, W.125, Y.147, R.212, R.216, R.220, P.225, T.226, F.227, P.228, M.229, L.230 Chain 6: L.11, P.12, Q.15, L.16, K.17, F.19, T.20, Q.21, P.24, A.27, A.28, I.31 Ligands: CDL.16, CDL.17, CDL.18, CDL.19, Q7G.21, CDL.22, CDL.36 Chain e: W.47, P.58, L.59, L.62 23 PLIP interactions: 14 interactions with chain 2, 5 interactions with chain 6, 1 interactions with chain 0, 3 interactions with chain e Hydrophobic interactions: 2:A.104, 2:A.107, 2:F.115, 2:P.225, 2:F.227, 2:F.227, 6:L.11, 6:P.12, 6:F.19, 6:A.27, 0:F.50, e:W.47, e:P.58, e:L.59 Hydrogen bonds: 2:R.212, 2:T.226, 2:T.226, 2:F.227, 2:M.229, 6:Q.21 Salt bridges: 2:R.216, 2:R.216, 2:R.220 CDL.16: 38 residues within 4Å: Chain 2: F.55, H.60, K.61, R.62, L.230, A.231, L.233, C.234 Chain 7: F.48, C.49, V.52, P.95, Q.96, G.97, R.100, V.101, T.104, G.105, T.108, Y.109, F.112, V.113 Chain 8: F.78, W.82 Chain Z: C.104, F.106 Ligands: CDL.15, CDL.17, CDL.18, CDL.19, PC1.26, CDL.27, PC1.28, CDL.35 Chain e: P.58, Q.61, L.62, W.65 21 PLIP interactions: 11 interactions with chain 7, 7 interactions with chain 2, 3 interactions with chain e Hydrophobic interactions: 7:F.48, 7:F.48, 7:V.101, 7:T.108, 7:F.112, 7:F.112, 2:L.230, e:Q.61, e:L.62, e:W.65 Hydrogen bonds: 7:Q.96, 7:G.97, 7:R.100, 2:R.62, 2:R.62, 2:A.231 Salt bridges: 7:R.100, 7:R.100, 2:K.61, 2:K.61, 2:R.62 CDL.17: 49 residues within 4Å: Chain 2: F.15, L.19, F.22, T.26, A.29, Y.30, W.33, L.88, Y.91, K.92, M.95, W.96, M.98, A.99, H.100, A.102, G.103, L.105, L.106, A.107, P.228, L.230, T.237, R.238, D.241 Chain 7: L.47, Y.93, P.95, Q.96, G.97, Y.98, G.99, V.101, L.102, I.103, G.105, V.106, P.107, Y.109, I.110, L.111 Ligands: CDL.15, CDL.16, CDL.18, CDL.19, LMT.20 Chain e: W.56, S.57, P.58 27 PLIP interactions: 13 interactions with chain 7, 13 interactions with chain 2, 1 interactions with chain e Hydrophobic interactions: 7:Y.98, 7:V.101, 7:L.102, 7:L.102, 7:I.103, 7:I.103, 7:V.106, 7:Y.109, 7:Y.109, 7:I.110, 7:I.110, 2:F.22, 2:Y.30, 2:Y.91, 2:M.98, 2:A.99, 2:A.102, 2:L.106, 2:P.228, e:W.56 Hydrogen bonds: 7:Q.96, 7:G.99, 2:W.33, 2:W.96 Salt bridges: 2:K.92, 2:R.238, 2:R.238 CDL.18: 42 residues within 4Å: Chain 2: M.1, Q.2, G.3, F.15, C.101, A.104, L.105, A.112, I.113, F.115, G.116, L.117, F.118, W.119, L.120, N.122, W.125, R.150, F.227 Chain 3: V.2, L.3, F.4, S.5, T.6, Y.7 Chain 6: Y.3, P.12, V.13, L.16, K.17, T.20, A.28 Ligands: CDL.15, CDL.16, CDL.17, CDL.19, Q7G.21, CDL.22, PC1.26, CDL.36 Chain e: V.43, W.47 18 PLIP interactions: 10 interactions with chain 2, 3 interactions with chain 3, 3 interactions with chain 6, 2 interactions with chain e Hydrophobic interactions: 2:F.15, 2:A.112, 2:F.118, 2:F.118, 2:W.119, 2:L.120, 2:F.227, 3:F.4, 6:L.16, e:W.47, e:W.47 Hydrogen bonds: 2:G.3, 2:N.122, 3:V.2, 3:T.6, 6:Y.3 Salt bridges: 2:R.150, 6:K.17 CDL.19: 36 residues within 4Å: Chain 2: K.61, R.212, K.213, L.230, A.231, R.232 Chain 6: P.24, M.25, A.28, V.29, I.31, F.32, I.35 Chain 7: M.41, S.44, G.45, F.48, T.108, F.112 Chain 8: T.85, W.86 Chain Z: F.47, D.48, F.98, L.99, F.102, L.103, C.104 Ligands: CDL.15, CDL.16, CDL.17, CDL.18, PC1.26, CDL.35, CDL.36 Chain e: L.62 13 PLIP interactions: 5 interactions with chain 2, 2 interactions with chain Z, 4 interactions with chain 6, 1 interactions with chain e, 1 interactions with chain 7 Hydrogen bonds: 2:R.232 Salt bridges: 2:K.61, 2:K.61, 2:R.212, 2:R.212 Hydrophobic interactions: Z:F.98, Z:F.102, 6:A.28, 6:I.31, 6:I.31, 6:F.32, e:L.62, 7:F.48 CDL.22: 24 residues within 4Å: Chain 3: Y.7, R.8, S.9, S.10, R.11, L.12, V.13, S.14, F.17 Chain 6: R.10, L.11, P.12 Ligands: CDL.14, CDL.15, CDL.18, CDL.36 Chain b: I.106, R.109, K.110, F.113, Q.114, L.116, G.117, V.120 15 PLIP interactions: 3 interactions with chain 6, 6 interactions with chain b, 6 interactions with chain 3 Hydrogen bonds: 6:R.10, 6:R.10, 6:L.11, b:R.109, 3:R.8, 3:L.12, 3:V.13 Hydrophobic interactions: b:F.113, b:F.113, b:Q.114, 3:F.17 Salt bridges: b:K.110, b:K.110, 3:R.8, 3:R.11 CDL.27: 38 residues within 4Å: Chain 7: R.63, Q.64, Y.65, G.66, L.67, P.68, H.69, F.70, F.71, I.73, V.75, D.76, A.79, K.80 Chain 8: R.25, F.50, L.53, I.56, M.59, M.60, A.63, M.66, R.68, Y.70, L.71, I.72, T.74, P.75, T.76, F.78, T.79, W.82 Chain Z: F.106, F.126, F.130 Ligands: CDL.16, PC1.28, CDL.35 28 PLIP interactions: 9 interactions with chain 7, 3 interactions with chain Z, 16 interactions with chain 8 Hydrophobic interactions: 7:Y.65, 7:F.70, 7:K.80, 7:K.80, Z:F.106, Z:F.126, Z:F.130, 8:F.50, 8:L.53, 8:M.59, 8:L.71, 8:I.72, 8:T.74, 8:P.75, 8:F.78, 8:F.78, 8:W.82, 8:W.82 Hydrogen bonds: 7:G.66, 7:P.68, 7:F.70, 8:R.68, 8:R.68 Salt bridges: 7:R.63, 7:K.80, 8:R.25, 8:R.68, 8:R.68 CDL.30: 31 residues within 4Å: Chain 9: H.11, N.15, V.16, Y.18, F.19, A.22, W.23, V.26 Chain N: L.16, A.54, V.55, T.58, K.59 Ligands: PEE.13, CDL.31, PEE.32, CDL.34 Chain a: R.72, K.106, V.109, L.110, I.113, V.116, L.117, I.122 Chain d: L.85, V.88, E.89, F.92, F.96 Chain f: I.39 20 PLIP interactions: 7 interactions with chain a, 5 interactions with chain d, 8 interactions with chain 9 Hydrophobic interactions: a:L.110, a:V.116, a:L.117, d:L.85, d:E.89, d:F.92, d:F.92, d:F.92, 9:Y.18, 9:F.19, 9:F.19, 9:F.19, 9:F.19, 9:W.23 Salt bridges: a:R.72, a:K.106, a:K.106, a:K.106 Hydrogen bonds: 9:N.15, 9:Y.18 CDL.31: 10 residues within 4Å: Chain N: K.106, L.117 Ligands: CDL.12, PEE.13, CDL.30, PEE.32 Chain a: T.58, K.59, L.62, R.66 6 PLIP interactions: 5 interactions with chain a, 1 interactions with chain N Hydrophobic interactions: a:L.62 Hydrogen bonds: a:R.66 Salt bridges: a:K.59, a:R.66, a:R.66, N:K.106 CDL.34: 31 residues within 4Å: Chain N: T.58, K.59, L.62, R.66 Ligands: CDL.12, PEE.13, CDL.30, PEE.32 Chain a: K.106, I.113, L.117 Chain d: M.28, L.29, S.79, S.80, W.81, N.82, F.84, L.85, V.88, F.92 Chain f: R.10, F.11, S.12, F.14, F.23, I.24, V.27, L.31, G.32, P.35 19 PLIP interactions: 3 interactions with chain N, 10 interactions with chain d, 1 interactions with chain a, 5 interactions with chain f Salt bridges: N:K.59, N:R.66, N:R.66 Hydrophobic interactions: d:W.81, d:W.81, d:F.84, d:F.84, d:L.85, a:L.117, f:F.11, f:F.11, f:F.14, f:L.31, f:P.35 Hydrogen bonds: d:S.79, d:S.79, d:S.80, d:W.81, d:N.82 CDL.35: 27 residues within 4Å: Chain 7: Q.34, R.37, R.38, M.41, A.42, G.45, A.46, C.49 Chain 8: F.78, I.81, W.82, T.85, W.86, K.87, V.90 Chain Z: F.98, C.101, F.102, C.104, F.106 Ligands: CDL.16, CDL.19, PC1.26, CDL.27, PC1.28 Chain e: R.69, L.73 13 PLIP interactions: 4 interactions with chain 7, 1 interactions with chain Z, 3 interactions with chain e, 5 interactions with chain 8 Hydrogen bonds: 7:Q.34, 8:W.82, 8:W.86 Salt bridges: 7:R.37, 7:R.38, 7:R.38, e:R.69, e:R.69, e:R.69, 8:K.87 Hydrophobic interactions: Z:F.98, 8:F.78, 8:I.81 CDL.36: 33 residues within 4Å: Chain 0: M.42, Y.45, Y.46, F.49, F.50 Chain 6: I.31, I.34, I.35, W.38, K.39 Chain 7: E.13 Ligands: CDL.14, CDL.15, CDL.18, CDL.19, CDL.22, PC1.26, Q7G.33 Chain e: R.33, Y.36, V.37, W.40, L.41, V.43, K.44, W.47, L.48, L.59, L.62, G.63, Y.66, S.67, R.71 20 PLIP interactions: 12 interactions with chain e, 1 interactions with chain 7, 4 interactions with chain 0, 3 interactions with chain 6 Hydrophobic interactions: e:W.40, e:W.40, e:W.40, e:L.48, e:Y.66, 0:Y.45, 0:F.49, 0:F.50, 0:F.50, 6:I.35 Hydrogen bonds: e:R.33, e:W.40, e:S.67, e:S.67, e:R.71, 7:E.13 Salt bridges: e:R.33, e:K.44, 6:K.39, 6:K.39

3 x PEE: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)

PEE.13: 25 residues within 4Å: Chain L: V.26, Y.30, K.33 Chain N: L.117, G.118, Q.120 Chain Z: F.173, Y.174, V.176, F.177, C.178 Ligands: CDL.12, CDL.30, CDL.31, PEE.32, CDL.34 Chain a: L.117, Y.144 Chain f: P.35, M.38, I.39, N.42, A.43, R.44, L.46 11 PLIP interactions: 3 interactions with chain L, 1 interactions with chain a, 4 interactions with chain Z, 2 interactions with chain f, 1 interactions with chain N Hydrophobic interactions: L:V.26, L:Y.30, a:L.117, Z:F.173, Z:F.173, Z:Y.174, Z:F.177, f:P.35 Salt bridges: L:K.33 Hydrogen bonds: f:A.43, N:Q.120 PEE.23: 8 residues within 4Å: Chain 2: W.5 Chain 3: V.2, L.3, F.4, S.5, S.10, L.12 Chain 6: R.10 2 PLIP interactions: 1 interactions with chain 6, 1 interactions with chain 3 Salt bridges: 6:R.10 Hydrogen bonds: 3:S.5 PEE.32: 13 residues within 4Å: Chain 9: V.26, Y.30, K.33 Chain N: L.117, Y.144 Ligands: CDL.12, PEE.13, CDL.30, CDL.31, CDL.34 Chain a: L.117, G.118, Q.120 6 PLIP interactions: 3 interactions with chain 9, 1 interactions with chain N, 2 interactions with chain a Hydrophobic interactions: 9:V.26, 9:Y.30, N:L.117, a:L.117, a:L.117 Salt bridges: 9:K.33

2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.20: 11 residues within 4Å: Chain 2: Y.30, W.33, L.34, Y.37, N.38, Q.41, K.42 Chain 7: W.91, Y.93, I.103 Ligands: CDL.17 2 PLIP interactions: 1 interactions with chain 7, 1 interactions with chain 2 Hydrophobic interactions: 7:W.91 Hydrogen bonds: 2:N.38 LMT.29: 9 residues within 4Å: Chain 7: K.31, G.32, W.35, W.36, F.39, V.43, L.111, L.115, R.119 1 PLIP interactions: 1 interactions with chain 7 Hydrogen bonds: 7:W.36

2 x Q7G: 2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside(Non-covalent)

Q7G.21: 10 residues within 4Å: Chain 2: G.110, Y.111, I.113, P.114, F.115 Ligands: CDL.15, CDL.18 Chain e: W.47, W.51, Y.52 4 PLIP interactions: 4 interactions with chain e Hydrophobic interactions: e:W.47, e:W.51, e:Y.52, e:Y.52 Q7G.33: 16 residues within 4Å: Chain 0: Y.46 Chain Z: F.4, F.6 Ligands: CDL.14, CDL.36 Chain b: Y.124, M.129, P.130, G.137, L.138, S.139, G.140, P.141, H.144 Chain e: A.26, L.27 2 PLIP interactions: 1 interactions with chain b, 1 interactions with chain 0 Hydrogen bonds: b:G.140 Hydrophobic interactions: 0:Y.46

4 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

PC1.24: 25 residues within 4Å: Chain 3: R.64, W.65, D.68, H.69, D.107 Chain a: I.98, L.101, L.104, T.105, V.108 Chain d: I.75, L.83, W.86, C.90, I.93, Y.94, Q.95, Y.97, E.98 Chain f: P.18, M.21, F.22, F.25, F.29, K.40 6 PLIP interactions: 1 interactions with chain f, 2 interactions with chain 3, 3 interactions with chain d Hydrophobic interactions: f:F.25, d:W.86, d:Y.97 Salt bridges: 3:D.68, 3:H.69, d:E.98 PC1.25: 40 residues within 4Å: Chain 3: F.33, A.44, L.45, P.46, L.51, Y.52, M.55, I.56, P.57, I.59, Y.60, F.61, R.64 Chain Z: L.12, L.15, L.16, Y.19, L.68, Y.69, L.71, I.72, L.73, Y.74, Y.166, Y.195, Y.199, L.203 Chain d: L.29, V.30, F.31 Chain f: M.1, L.2, F.23, S.26, V.27, F.29, W.30, E.33, Y.34, M.37 19 PLIP interactions: 6 interactions with chain 3, 7 interactions with chain f, 5 interactions with chain Z, 1 interactions with chain d Hydrophobic interactions: 3:L.45, 3:P.46, 3:Y.52, 3:P.57, 3:Y.60, f:F.23, f:W.30, f:W.30, Z:I.72, d:V.30 Hydrogen bonds: 3:Y.60, f:W.30, f:Y.34, f:Y.34, Z:L.73, Z:Y.166, Z:Y.199 Salt bridges: f:E.33 pi-Cation interactions: Z:Y.166 PC1.26: 32 residues within 4Å: Chain 0: T.34, L.37 Chain 6: F.32, T.33, I.35, F.36, L.37, K.39, H.40, M.41 Chain 8: T.85, W.86, A.89, V.90, Y.92, F.93, W.94 Chain Z: Y.83, F.86, C.87, F.90 Ligands: CDL.16, CDL.18, CDL.19, CDL.35, CDL.36 Chain e: W.65, Y.66, R.69, S.70, L.73, F.74 12 PLIP interactions: 3 interactions with chain Z, 5 interactions with chain 6, 3 interactions with chain 8, 1 interactions with chain e Hydrophobic interactions: Z:Y.83, Z:F.86, Z:F.90, 6:F.32, 6:F.32, 8:W.86, e:Y.66 Salt bridges: 6:K.39, 6:K.39, 6:H.40 Hydrogen bonds: 8:W.94 pi-Cation interactions: 8:W.94 PC1.28: 16 residues within 4Å: Chain 7: C.49, V.52, L.53, R.63, Q.64, Y.65, V.75, A.79, M.83 Chain 8: R.25, Y.70 Chain Z: F.106, F.107 Ligands: CDL.16, CDL.27, CDL.35 2 PLIP interactions: 2 interactions with chain 7 Hydrogen bonds: 7:Q.64 Salt bridges: 7:R.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gahura, O. et al., An ancestral interaction module promotes oligomerization in divergent mitochondrial ATP synthases. Nat Commun (2022)

Release Date

2022-10-26

Peptides

ATP synthase subunit alpha, mitochondrial: ABC
ATP synthase subunit beta, mitochondrial: DEF
ATP synthase gamma subunit: G
ATP synthase, epsilon chain, putative: H
ATP synthase subunit epsilon, mitochondrial: I
ATP synthase subunit p18, mitochondrial: JKM
subunit-e: L9
subunit-g: Na
OSCP: O
ATPase subunit 9, putative: PQRSTUVWXY
ATP synthase subunit a: Z
subunit-8: 0
subunit-d: 1
ATPTB1: 2
subunit-f: 3
ATPTB3: 4
ATPTB4: 5
subunit-i/j: 6
ATPTB6: 7
subunit-k: 8
ATPTB11: b
ATPTB12: c
subunit-b: d
ATPEG3: e
ATPEG4: f

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A1

B
B1

C
C1

D
D1

E
E1

F
F1

G
G1

H
H1

I
I1

J
J1

K
K1

M
L1

L
L

9
l

N
M

a
m

O
M1

P
O1

Q
P1

R
Q1

S
R1

T
S1

U
T1

V
U1

W
V1

X
W1

Y
X1

Z
a

0
c

1
d

2
e

3
f

4
g

5
h

6
i

7
j

8
k

b
n

c
o

d
p

e
q

f
r

Membrane

We predict this structure to be a membrane protein.
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ATP synthase subunit alpha, mitochondrial

ATP synthase subunit beta, mitochondrial

ATP synthase gamma subunit

ATP synthase, epsilon chain, putative

ATP synthase subunit epsilon, mitochondrial

ATP synthase subunit p18, mitochondrial

subunit-e

subunit-g

OSCP

ATPase subunit 9, putative

ATP synthase subunit a

subunit-8

subunit-d

ATPTB1

subunit-f

ATPTB3

ATPTB4

subunit-i/j

ATPTB6

subunit-k

ATPTB11

ATPTB12

subunit-b

ATPEG3

ATPEG4

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