- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-3-1-10-1-3-3-mer
- Ligands
- 14 x CDL: CARDIOLIPIN(Non-covalent)
- 3 x PEE: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)
PEE.3: 25 residues within 4Å:- Chain A: V.26, Y.30, K.33
- Chain B: L.117, G.118, Q.120
- Chain C: F.173, Y.174, V.176, F.177, C.178
- Chain N: L.117, Y.144
- Chain S: P.35, M.38, I.39, N.42, A.43, R.44, L.46
- Ligands: CDL.1, CDL.2, CDL.20, CDL.21, PEE.22
12 PLIP interactions:3 interactions with chain A, 1 interactions with chain N, 3 interactions with chain S, 1 interactions with chain B, 4 interactions with chain C- Hydrophobic interactions: A:V.26, A:Y.30, N:L.117, S:P.35, S:I.39, C:F.173, C:F.173, C:Y.174, C:F.177
- Salt bridges: A:K.33
- Hydrogen bonds: S:A.43, B:Q.120
PEE.13: 8 residues within 4Å:- Chain F: W.5
- Chain G: V.2, L.3, F.4, S.5, S.10, L.12
- Chain J: R.10
2 PLIP interactions:1 interactions with chain G, 1 interactions with chain J- Hydrogen bonds: G:S.5
- Salt bridges: J:R.10
PEE.22: 13 residues within 4Å:- Chain B: L.117, Y.144
- Chain M: V.26, Y.30, K.33
- Chain N: L.117, G.118, Q.120
- Ligands: CDL.1, CDL.2, PEE.3, CDL.20, CDL.21
6 PLIP interactions:2 interactions with chain N, 3 interactions with chain M, 1 interactions with chain B- Hydrophobic interactions: N:L.117, M:V.26, M:Y.30, B:L.117
- Hydrogen bonds: N:Q.120
- Salt bridges: M:K.33
- 2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
LMT.10: 11 residues within 4Å:- Chain F: Y.30, W.33, L.34, Y.37, N.38, Q.41, K.42
- Chain K: W.91, Y.93, I.103
- Ligands: CDL.7
2 PLIP interactions:1 interactions with chain F, 1 interactions with chain K- Hydrogen bonds: F:N.38
- Hydrophobic interactions: K:W.91
LMT.18: 9 residues within 4Å:- Chain K: K.31, G.32, W.35, W.36, F.39, V.43, L.111, L.115, R.119
1 PLIP interactions:1 interactions with chain K- Hydrogen bonds: K:W.36
- 2 x Q7G: 2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside(Non-covalent)
Q7G.11: 10 residues within 4Å:- Chain F: G.110, Y.111, I.113, P.114, F.115
- Chain R: W.47, W.51, Y.52
- Ligands: CDL.5, CDL.8
4 PLIP interactions:4 interactions with chain R- Hydrophobic interactions: R:W.47, R:W.51, R:Y.52, R:Y.52
Q7G.23: 16 residues within 4Å:- Chain C: F.4, F.6
- Chain D: Y.46
- Chain O: Y.124, M.129, P.130, G.137, L.138, S.139, G.140, P.141, H.144
- Chain R: A.26, L.27
- Ligands: CDL.4, CDL.25
3 PLIP interactions:1 interactions with chain C, 1 interactions with chain O, 1 interactions with chain D- Hydrophobic interactions: C:F.4, D:Y.46
- Hydrogen bonds: O:G.140
- 4 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
PC1.14: 41 residues within 4Å:- Chain C: L.12, L.15, L.16, Y.19, L.68, Y.69, L.71, I.72, L.73, Y.74, Y.166, Y.195, Y.199, L.203
- Chain G: F.33, A.44, L.45, P.46, L.51, Y.52, M.55, I.56, P.57, I.59, Y.60, F.61, R.64, L.111
- Chain Q: L.29, V.30, F.31
- Chain S: M.1, L.2, F.23, S.26, V.27, F.29, W.30, E.33, Y.34, M.37
21 PLIP interactions:6 interactions with chain C, 7 interactions with chain G, 7 interactions with chain S, 1 interactions with chain Q- Hydrophobic interactions: C:I.72, C:Y.199, G:L.45, G:P.46, G:Y.52, G:M.55, G:I.56, G:Y.60, S:F.23, S:W.30, S:W.30, Q:V.30
- Hydrogen bonds: C:L.73, C:Y.166, C:Y.199, G:Y.60, S:W.30, S:Y.34, S:Y.34
- pi-Cation interactions: C:Y.166
- Salt bridges: S:E.33
PC1.15: 32 residues within 4Å:- Chain C: Y.83, F.86, C.87, F.90
- Chain D: T.34, L.37
- Chain J: F.32, T.33, I.35, F.36, L.37, K.39, H.40, M.41
- Chain L: T.85, W.86, A.89, V.90, Y.92, F.93, W.94
- Chain R: W.65, Y.66, R.69, S.70, L.73, F.74
- Ligands: CDL.6, CDL.8, CDL.9, CDL.19, CDL.25
15 PLIP interactions:2 interactions with chain R, 3 interactions with chain C, 5 interactions with chain L, 5 interactions with chain J- Hydrophobic interactions: R:W.65, R:Y.66, C:Y.83, C:F.86, C:F.90, L:W.86, L:W.86, J:F.32, J:F.32
- Hydrogen bonds: L:A.89, L:W.94
- pi-Cation interactions: L:W.94
- Salt bridges: J:K.39, J:K.39, J:H.40
PC1.17: 16 residues within 4Å:- Chain C: F.106, F.107
- Chain K: C.49, V.52, L.53, R.63, Q.64, Y.65, V.75, A.79, M.83
- Chain L: R.25, Y.70
- Ligands: CDL.6, CDL.16, CDL.19
2 PLIP interactions:2 interactions with chain K- Hydrogen bonds: K:Q.64
- Salt bridges: K:R.63
PC1.24: 26 residues within 4Å:- Chain G: R.64, W.65, D.68, H.69, R.103, D.107
- Chain N: I.98, L.101, L.104, T.105, V.108
- Chain Q: I.75, L.83, W.86, C.90, I.93, Y.94, Q.95, Y.97, E.98
- Chain S: P.18, M.21, F.22, F.25, F.29, K.40
6 PLIP interactions:1 interactions with chain S, 2 interactions with chain G, 3 interactions with chain Q- Hydrophobic interactions: S:F.25, Q:W.86, Q:Y.97
- Salt bridges: G:D.68, G:H.69, Q:E.98
- 1 x UTP: URIDINE 5'-TRIPHOSPHATE(Non-covalent)
UTP.26: 14 residues within 4Å:- Chain 0: V.78, R.82
- Chain 3: R.82
- Chain 4: R.82
- Chain 5: R.82
- Chain 6: R.82
- Chain 7: R.82
- Chain 9: N.208, E.209, E.210
- Chain T: N.76, Y.79, K.88
- Chain Z: R.82
9 PLIP interactions:1 interactions with chain 7, 1 interactions with chain 3, 4 interactions with chain T, 1 interactions with chain 4, 1 interactions with chain 6, 1 interactions with chain 5- Salt bridges: 7:R.82, 3:R.82, T:K.88, T:K.88, 4:R.82, 6:R.82, 5:R.82
- Hydrogen bonds: T:N.76, T:Y.79
- 4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.27: 16 residues within 4Å:- Ligands: MG.28
- Chain a: F.187, R.208, Q.209, T.210, G.211, K.212, T.213, S.214, F.394, R.399, P.400, Q.464, K.465
- Chain d: R.382, Y.394
17 PLIP interactions:17 interactions with chain a- Hydrogen bonds: a:Q.209, a:Q.209, a:T.210, a:T.210, a:G.211, a:K.212, a:T.213, a:T.213, a:S.214, a:S.214, a:R.399, a:Q.464, a:K.465
- Salt bridges: a:K.212, a:K.212
- pi-Cation interactions: a:K.465, a:K.465
ATP.29: 16 residues within 4Å:- Ligands: MG.30
- Chain b: F.187, R.208, Q.209, T.210, G.211, K.212, T.213, S.214, F.394, R.399, P.400, Q.464, K.465
- Chain e: R.382, Y.394
15 PLIP interactions:15 interactions with chain b- Hydrogen bonds: b:Q.209, b:T.210, b:T.210, b:G.211, b:K.212, b:T.213, b:S.214, b:S.214, b:R.399, b:Q.464, b:K.465
- Salt bridges: b:K.212, b:K.212
- pi-Cation interactions: b:K.465, b:K.465
ATP.31: 17 residues within 4Å:- Ligands: MG.32
- Chain c: F.187, R.208, Q.209, T.210, G.211, K.212, T.213, S.214, F.394, R.399, P.400, Q.464, K.465, R.582
- Chain f: R.382, D.385
14 PLIP interactions:13 interactions with chain c, 1 interactions with chain f- Hydrogen bonds: c:Q.209, c:T.210, c:G.211, c:K.212, c:T.213, c:S.214, c:S.214, c:R.399, c:Q.464, f:D.385
- Salt bridges: c:K.212, c:K.212
- pi-Cation interactions: c:K.465, c:K.465
ATP.33: 21 residues within 4Å:- Ligands: MG.34
- Chain c: I.380, S.381, V.408, R.410
- Chain d: G.184, A.185, G.186, V.187, G.188, K.189, T.190, V.191, R.216, Y.337, Y.371, P.372, F.444, A.447, F.450, T.451
16 PLIP interactions:11 interactions with chain d, 5 interactions with chain c- Hydrogen bonds: d:G.186, d:V.187, d:G.188, d:K.189, d:T.190, d:V.191, c:S.381, c:S.381
- Salt bridges: d:K.189, d:K.189, d:R.216, c:R.410, c:R.410, c:R.410
- pi-Stacking: d:Y.371, d:Y.371
- 5 x MG: MAGNESIUM ION(Non-covalent)
MG.28: 2 residues within 4Å:- Ligands: ATP.27
- Chain a: T.213
1 PLIP interactions:1 interactions with chain a- Metal complexes: a:T.213
MG.30: 3 residues within 4Å:- Ligands: ATP.29
- Chain b: T.213, D.306
1 PLIP interactions:1 interactions with chain b- Metal complexes: b:T.213
MG.32: 4 residues within 4Å:- Ligands: ATP.31
- Chain c: K.212, T.213, D.306
1 PLIP interactions:1 interactions with chain c- Metal complexes: c:T.213
MG.34: 5 residues within 4Å:- Ligands: ATP.33
- Chain d: T.190, E.215, R.216, E.219
2 PLIP interactions:2 interactions with chain d- Metal complexes: d:T.190, d:E.215
MG.36: 5 residues within 4Å:- Ligands: ADP.35
- Chain e: T.190, R.216, E.219, D.282
1 PLIP interactions:1 interactions with chain e- Metal complexes: e:T.190
- 1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.35: 17 residues within 4Å:- Ligands: MG.36
- Chain a: V.408, S.409, R.410
- Chain e: G.184, A.185, G.186, V.187, G.188, K.189, T.190, V.191, Y.371, F.444, A.447, F.450, T.451
12 PLIP interactions:10 interactions with chain e, 2 interactions with chain a- Hydrogen bonds: e:G.186, e:V.187, e:G.188, e:K.189, e:T.190, e:T.190, e:V.191, e:Y.371
- Salt bridges: e:K.189, a:R.410, a:R.410
- pi-Stacking: e:Y.371
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gahura, O. et al., An ancestral interaction module promotes oligomerization in divergent mitochondrial ATP synthases. Nat Commun (2022)
- Release Date
- 2022-10-26
- Peptides
- subunit-e: AM
subunit-g: BN
ATP synthase subunit a: C
subunit-8: D
subunit-d: E
ATPTB1: F
subunit-f: G
ATPTB3: H
ATPTB4: I
subunit-i/j: J
ATPTB6: K
subunit-k: L
ATPTB11: O
ATPTB12: P
subunit-b: Q
ATPEG3: R
ATPEG4: S
ATP synthase, epsilon chain, putative: T
ATP synthase subunit epsilon, mitochondrial: U
ATP synthase subunit p18, mitochondrial: VWX
OSCP: Y
ATPase subunit 9, putative: Z012345678
ATP synthase gamma subunit: 9
ATP synthase subunit alpha, mitochondrial: abc
ATP synthase subunit beta, mitochondrial: def - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
LM
lB
MN
mC
aD
cE
dF
eG
fH
gI
hJ
iK
jL
kO
nP
oQ
pR
qS
rT
H1U
I1V
J1W
K1X
L1Y
M1Z
O10
P11
Q12
R13
S14
T15
U16
V17
W18
X19
G1a
A1b
B1c
C1d
D1e
E1f
F1 - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 8apg.1
rotational state 2b of the Trypanosoma brucei mitochondrial ATP synthase dimer
subunit-e
Toggle Identical (AM)subunit-g
Toggle Identical (BN)ATP synthase subunit a
subunit-8
subunit-d
ATPTB1
subunit-f
ATPTB3
ATPTB4
subunit-i/j
ATPTB6
subunit-k
ATPTB11
ATPTB12
subunit-b
ATPEG3
ATPEG4
ATP synthase, epsilon chain, putative
ATP synthase subunit epsilon, mitochondrial
ATP synthase subunit p18, mitochondrial
Toggle Identical (VW)OSCP
ATPase subunit 9, putative
Toggle Identical (Z012345678)ATP synthase gamma subunit
ATP synthase subunit alpha, mitochondrial
ATP synthase subunit beta, mitochondrial
Related Entries With Identical Sequence
8ap6.1 | 8ap6.2 | 8ap6.3 | 8ap6.4 | 8ap6.5 | 8ap6.6 | 8ap6.7 | 8ap6.8 | 8ap6.9 | 8ap6.10 | 8ap6.11 | 8ap6.12 | 8ap6.13 | 8ap6.14 | 8ap6.15 | 8ap6.16 | 8ap6.17 | 8ap6.18 | 8ap6.19 | 8ap6.20 | 8ap6.21 | 8ap6.22 | 8ap6.23 | 8ap6.24 | 8ap6.25 | 8ap6.26 | 8ap6.27 | 8ap6.28 | 8ap6.29 | 8ap6.30 more...less...8ap6.31 | 8ap6.32 | 8ap6.33 | 8ap6.34 | 8ap6.35 | 8ap6.36 | 8ap6.37 | 8ap6.38 | 8ap6.39 | 8ap6.40 | 8ap6.41 | 8ap6.42 | 8ap6.43 | 8ap6.44 | 8ap6.45 | 8ap6.46 | 8ap6.47 | 8ap6.48 | 8ap6.49 | 8ap6.50 | 8ap6.51 | 8ap6.52 | 8ap6.53 | 8ap6.54 | 8ap6.55 | 8ap6.56 | 8ap6.57 | 8ap6.58 | 8ap6.59 | 8ap6.60 | 8ap6.61 | 8ap6.62 | 8ap6.63 | 8ap6.64 | 8ap6.65 | 8ap6.66 | 8ap6.67 | 8ap6.68 | 8ap6.69 | 8ap6.70 | 8ap6.71 | 8ap6.72 | 8ap6.73 | 8ap6.74 | 8ap6.75 | 8ap6.76 | 8ap6.77 | 8ap6.78 | 8ap6.79 | 8ap6.80 | 8ap7.1 | 8ap8.1 | 8ap9.1 | 8apa.1 | 8apb.1 | 8apc.1 | 8apd.1 | 8ape.1 | 8apf.1 | 8aph.1 | 8apj.1 | 8apk.1