SMTL ID : 8apf.1

rotational state 2a of the Trypanosoma brucei mitochondrial ATP synthase dimer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-3-2-2-1-10-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-3-3-mer

Ligands

14 x CDL: CARDIOLIPIN(Non-covalent)

CDL.1: 28 residues within 4Å: Chain 3: L.16, A.54, V.55, T.58, K.59 Chain E: H.11, N.15, V.16, Y.18, F.19, A.22, W.23, V.26 Chain G: R.72, K.106, V.109, L.110, I.113, V.116, L.117, I.122 Chain S: V.176, F.177, F.181 Ligands: CDL.2, PEE.3, PEE.20, CDL.21 19 PLIP interactions: 8 interactions with chain G, 9 interactions with chain E, 1 interactions with chain S, 1 interactions with chain 3 Hydrophobic interactions: G:L.110, G:I.113, G:V.116, G:L.117, E:Y.18, E:F.19, E:F.19, E:F.19, E:F.19, E:F.19, E:W.23, S:F.177 Salt bridges: G:R.72, G:K.106, G:K.106, G:K.106 Hydrogen bonds: E:N.15, E:Y.18, 3:K.59 CDL.2: 30 residues within 4Å: Chain 3: K.106, L.117 Chain 6: M.28, L.29, S.79, S.80, W.81, N.82, F.84, L.85, V.88, F.92 Chain 8: R.10, F.11, S.12, F.14, F.23, I.24, V.27, L.31, G.32, P.35 Chain G: T.58, K.59, L.62, R.66 Ligands: CDL.1, PEE.3, CDL.19, PEE.20 23 PLIP interactions: 4 interactions with chain G, 7 interactions with chain 8, 10 interactions with chain 6, 2 interactions with chain 3 Hydrophobic interactions: G:L.62, 8:F.11, 8:F.11, 8:F.14, 8:F.23, 8:V.27, 8:L.31, 8:P.35, 6:L.29, 6:W.81, 6:W.81, 6:F.84, 6:F.84, 6:L.85, 3:L.117 Hydrogen bonds: G:R.66, 6:S.79, 6:S.79, 6:S.80, 6:W.81 Salt bridges: G:K.59, G:R.66, 3:K.106 CDL.4: 30 residues within 4Å: Chain 4: Q.114, G.117, Y.118, V.120, A.121, Y.124, L.125, H.144, I.146, M.147 Chain 7: L.27, L.29 Chain S: F.2, L.3, F.4, F.5, F.6, C.7, F.10, R.13 Chain T: S.39, M.42, V.43, Y.46, W.51, M.54 Chain Z: W.38 Ligands: CDL.12, Q7G.22, CDL.25 12 PLIP interactions: 7 interactions with chain S, 3 interactions with chain 4, 1 interactions with chain 7, 1 interactions with chain T Hydrophobic interactions: S:F.2, S:F.6, S:F.10, 4:A.121, 4:Y.124, 7:L.29, T:M.42 Hydrogen bonds: S:F.5, S:C.7, 4:Y.118 Salt bridges: S:R.13, S:R.13 CDL.5: 45 residues within 4Å: Chain 7: W.47, P.58, L.59, L.62 Chain T: F.49, F.50, M.54 Chain V: H.100, C.101, G.103, A.104, A.107, T.108, Y.111, F.115, W.125, Y.147, R.212, R.216, R.220, P.225, T.226, F.227, P.228, M.229, L.230 Chain Z: L.11, P.12, Q.15, L.16, K.17, F.19, T.20, Q.21, P.24, A.27, A.28, I.31 Ligands: CDL.6, CDL.7, CDL.8, CDL.9, Q7G.11, CDL.12, CDL.25 27 PLIP interactions: 15 interactions with chain V, 6 interactions with chain Z, 3 interactions with chain T, 3 interactions with chain 7 Hydrophobic interactions: V:A.104, V:A.107, V:F.115, V:P.225, V:F.227, V:F.227, Z:L.11, Z:P.12, Z:F.19, Z:A.27, T:F.50, T:F.50, T:F.50, 7:W.47, 7:P.58, 7:L.59 Hydrogen bonds: V:R.212, V:T.226, V:T.226, V:T.226, V:F.227, V:M.229, Z:T.20, Z:Q.21 Salt bridges: V:R.216, V:R.216, V:R.220 CDL.6: 38 residues within 4Å: Chain 0: F.48, C.49, V.52, P.95, Q.96, G.97, R.100, V.101, T.104, G.105, T.108, Y.109, F.112, V.113 Chain 1: F.78, W.82 Chain 7: P.58, Q.61, L.62, W.65 Chain S: C.104, F.106 Chain V: F.55, H.60, K.61, R.62, L.230, A.231, L.233, C.234 Ligands: CDL.5, CDL.7, CDL.8, CDL.9, PC1.15, CDL.16, PC1.17, CDL.24 21 PLIP interactions: 3 interactions with chain 7, 7 interactions with chain V, 11 interactions with chain 0 Hydrophobic interactions: 7:Q.61, 7:L.62, 7:W.65, V:L.230, 0:F.48, 0:V.52, 0:V.101, 0:T.108, 0:Y.109, 0:F.112 Hydrogen bonds: V:R.62, V:R.62, V:A.231, 0:Q.96, 0:G.97, 0:R.100 Salt bridges: V:K.61, V:K.61, V:R.62, 0:R.100, 0:R.100 CDL.7: 48 residues within 4Å: Chain 0: L.47, Y.93, P.95, Q.96, G.97, Y.98, G.99, V.101, L.102, I.103, G.105, V.106, P.107, Y.109, I.110, L.111 Chain 7: W.56, S.57, P.58 Chain V: F.15, L.19, F.22, T.26, A.29, Y.30, W.33, Y.91, K.92, M.95, W.96, M.98, A.99, H.100, A.102, G.103, L.105, L.106, A.107, P.228, L.230, T.237, R.238, D.241 Ligands: CDL.5, CDL.6, CDL.8, CDL.9, LMT.10 24 PLIP interactions: 11 interactions with chain 0, 12 interactions with chain V, 1 interactions with chain 7 Hydrophobic interactions: 0:Y.98, 0:V.101, 0:L.102, 0:L.102, 0:I.103, 0:I.103, 0:V.106, 0:Y.109, 0:Y.109, V:F.22, V:Y.91, V:M.98, V:A.99, V:A.102, V:P.228, 7:W.56 Hydrogen bonds: 0:Q.96, 0:G.99, V:W.33, V:W.96 Salt bridges: V:K.92, V:K.92, V:R.238, V:R.238 CDL.8: 42 residues within 4Å: Chain 7: V.43, W.47 Chain V: M.1, Q.2, G.3, F.15, C.101, A.104, L.105, A.112, I.113, F.115, G.116, L.117, F.118, W.119, L.120, N.122, W.125, R.150, F.227 Chain W: V.2, L.3, F.4, S.5, T.6, Y.7 Chain Z: Y.3, P.12, V.13, L.16, K.17, T.20, A.28 Ligands: CDL.5, CDL.6, CDL.7, CDL.9, Q7G.11, CDL.12, PC1.15, CDL.25 21 PLIP interactions: 11 interactions with chain V, 4 interactions with chain Z, 4 interactions with chain W, 2 interactions with chain 7 Hydrophobic interactions: V:F.15, V:A.104, V:A.112, V:F.118, V:F.118, V:W.119, V:L.120, V:F.227, Z:L.16, W:F.4, W:F.4, 7:W.47, 7:W.47 Hydrogen bonds: V:G.3, V:N.122, Z:Y.3, Z:Y.3, W:V.2, W:Y.7 Salt bridges: V:R.150, Z:K.17 CDL.9: 36 residues within 4Å: Chain 0: M.41, S.44, G.45, F.48, T.108, F.112 Chain 1: T.85, W.86 Chain 7: L.62 Chain S: F.47, D.48, F.98, L.99, F.102, L.103, C.104 Chain V: K.61, R.212, K.213, L.230, A.231, R.232 Chain Z: P.24, M.25, A.28, V.29, I.31, F.32, I.35 Ligands: CDL.5, CDL.6, CDL.7, CDL.8, PC1.15, CDL.24, CDL.25 13 PLIP interactions: 4 interactions with chain Z, 4 interactions with chain V, 2 interactions with chain S, 1 interactions with chain 7, 2 interactions with chain 0 Hydrophobic interactions: Z:A.28, Z:I.31, Z:I.31, Z:F.32, S:F.98, S:F.102, 7:L.62, 0:F.48, 0:F.48 Hydrogen bonds: V:R.232 Salt bridges: V:K.61, V:R.212, V:R.212 CDL.12: 22 residues within 4Å: Chain 4: I.106, R.109, K.110, F.113, Q.114, L.116, G.117, V.120 Chain W: R.8, S.10, R.11, L.12, V.13, S.14, F.17 Chain Z: R.10, L.11, P.12 Ligands: CDL.4, CDL.5, CDL.8, CDL.25 17 PLIP interactions: 7 interactions with chain W, 7 interactions with chain 4, 3 interactions with chain Z Hydrophobic interactions: W:V.13, W:F.17, 4:F.113, 4:F.113, 4:Q.114, 4:V.120 Hydrogen bonds: W:R.8, W:L.12, W:V.13, 4:R.109, Z:R.10, Z:R.10, Z:L.11 Salt bridges: W:R.8, W:R.11, 4:K.110, 4:K.110 CDL.16: 38 residues within 4Å: Chain 0: R.63, Q.64, Y.65, G.66, L.67, P.68, H.69, F.70, F.71, I.73, V.75, D.76, A.79, K.80 Chain 1: R.25, F.50, L.53, I.56, M.59, M.60, A.63, M.66, R.68, Y.70, L.71, I.72, T.74, P.75, T.76, F.78, T.79, W.82 Chain S: F.106, F.126, F.130 Ligands: CDL.6, PC1.17, CDL.24 27 PLIP interactions: 16 interactions with chain 1, 3 interactions with chain S, 8 interactions with chain 0 Hydrophobic interactions: 1:F.50, 1:L.53, 1:M.59, 1:I.72, 1:T.74, 1:P.75, 1:F.78, 1:F.78, 1:W.82, 1:W.82, 1:W.82, S:F.106, S:F.126, S:F.130, 0:Y.65, 0:F.70, 0:K.80, 0:K.80 Hydrogen bonds: 1:R.68, 1:R.68, 0:P.68, 0:F.70 Salt bridges: 1:R.25, 1:R.68, 1:R.68, 0:R.63, 0:K.80 CDL.19: 31 residues within 4Å: Chain 2: H.11, N.15, V.16, Y.18, F.19, A.22, W.23, V.26 Chain 3: R.72, K.106, V.109, L.110, I.113, V.116, L.117, I.122 Chain 6: L.85, V.88, E.89, F.92, F.96 Chain 8: I.39 Chain G: L.16, A.54, V.55, T.58, K.59 Ligands: CDL.2, PEE.3, PEE.20, CDL.21 22 PLIP interactions: 5 interactions with chain 6, 9 interactions with chain 2, 1 interactions with chain G, 7 interactions with chain 3 Hydrophobic interactions: 6:L.85, 6:E.89, 6:F.92, 6:F.92, 6:F.92, 2:N.15, 2:Y.18, 2:F.19, 2:F.19, 2:F.19, 2:F.19, 2:F.19, 3:L.110, 3:V.116, 3:L.117 Hydrogen bonds: 2:N.15, 2:Y.18, G:K.59 Salt bridges: 3:R.72, 3:K.106, 3:K.106, 3:K.106 CDL.21: 10 residues within 4Å: Chain 3: T.58, K.59, L.62, R.66 Chain G: K.106, L.117 Ligands: CDL.1, PEE.3, CDL.19, PEE.20 6 PLIP interactions: 2 interactions with chain G, 4 interactions with chain 3 Hydrophobic interactions: G:L.117, 3:L.62 Salt bridges: G:K.106, 3:K.59, 3:R.66 Hydrogen bonds: 3:R.66 CDL.24: 27 residues within 4Å: Chain 0: Q.34, R.37, R.38, M.41, A.42, G.45, A.46, C.49 Chain 1: F.78, I.81, W.82, T.85, W.86, K.87, V.90 Chain 7: R.69, L.73 Chain S: F.98, C.101, F.102, C.104, F.106 Ligands: CDL.6, CDL.9, PC1.15, CDL.16, PC1.17 11 PLIP interactions: 5 interactions with chain 0, 3 interactions with chain 1, 3 interactions with chain 7 Hydrogen bonds: 0:Q.34, 0:R.38, 1:W.82, 1:W.86 Salt bridges: 0:R.37, 0:R.38, 0:R.38, 1:K.87, 7:R.69, 7:R.69, 7:R.69 CDL.25: 33 residues within 4Å: Chain 0: E.13 Chain 7: R.33, Y.36, V.37, W.40, L.41, V.43, K.44, W.47, L.48, L.59, L.62, G.63, Y.66, S.67, R.71 Chain T: M.42, Y.45, Y.46, F.49, F.50 Chain Z: I.31, I.34, I.35, W.38, K.39 Ligands: CDL.4, CDL.5, CDL.8, CDL.9, CDL.12, PC1.15, Q7G.22 20 PLIP interactions: 12 interactions with chain 7, 4 interactions with chain T, 2 interactions with chain 0, 2 interactions with chain Z Hydrophobic interactions: 7:W.40, 7:W.40, 7:W.40, 7:L.48, 7:Y.66, T:Y.45, T:F.49, T:F.50, T:F.50 Hydrogen bonds: 7:R.33, 7:W.40, 7:S.67, 7:S.67, 7:R.71, 0:E.13, 0:E.13 Salt bridges: 7:R.33, 7:K.44, Z:K.39, Z:K.39

3 x PEE: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)

PEE.3: 25 residues within 4Å: Chain 3: L.117, Y.144 Chain 8: P.35, M.38, I.39, N.42, A.43, R.44, L.46 Chain E: V.26, Y.30, K.33 Chain G: L.117, G.118, Q.120 Chain S: F.173, Y.174, V.176, F.177, C.178 Ligands: CDL.1, CDL.2, CDL.19, PEE.20, CDL.21 11 PLIP interactions: 3 interactions with chain E, 2 interactions with chain 8, 1 interactions with chain G, 1 interactions with chain 3, 4 interactions with chain S Hydrophobic interactions: E:V.26, E:Y.30, 8:P.35, 3:L.117, S:F.173, S:F.173, S:Y.174, S:F.177 Salt bridges: E:K.33 Hydrogen bonds: 8:A.43, G:Q.120 PEE.13: 8 residues within 4Å: Chain V: W.5 Chain W: V.2, L.3, F.4, S.5, S.10, L.12 Chain Z: R.10 2 PLIP interactions: 1 interactions with chain Z, 1 interactions with chain W Salt bridges: Z:R.10 Hydrogen bonds: W:S.5 PEE.20: 13 residues within 4Å: Chain 2: V.26, Y.30, K.33 Chain 3: L.117, G.118, Q.120 Chain G: L.117, Y.144 Ligands: CDL.1, CDL.2, PEE.3, CDL.19, CDL.21 5 PLIP interactions: 1 interactions with chain G, 3 interactions with chain 2, 1 interactions with chain 3 Hydrophobic interactions: G:L.117, 2:V.26, 2:Y.30 Salt bridges: 2:K.33 Hydrogen bonds: 3:Q.120

2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.10: 11 residues within 4Å: Chain 0: W.91, Y.93, I.103 Chain V: Y.30, W.33, L.34, Y.37, N.38, Q.41, K.42 Ligands: CDL.7 2 PLIP interactions: 1 interactions with chain 0, 1 interactions with chain V Hydrophobic interactions: 0:W.91 Hydrogen bonds: V:N.38 LMT.18: 9 residues within 4Å: Chain 0: K.31, G.32, W.35, W.36, F.39, V.43, L.111, L.115, R.119 1 PLIP interactions: 1 interactions with chain 0 Hydrogen bonds: 0:W.36

2 x Q7G: 2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside(Non-covalent)

Q7G.11: 10 residues within 4Å: Chain 7: W.47, W.51, Y.52 Chain V: G.110, Y.111, I.113, P.114, F.115 Ligands: CDL.5, CDL.8 4 PLIP interactions: 4 interactions with chain 7 Hydrophobic interactions: 7:W.47, 7:W.51, 7:Y.52, 7:Y.52 Q7G.22: 16 residues within 4Å: Chain 4: Y.124, M.129, P.130, G.137, L.138, S.139, G.140, P.141, H.144 Chain 7: A.26, L.27 Chain S: F.4, F.6 Chain T: Y.46 Ligands: CDL.4, CDL.25 3 PLIP interactions: 1 interactions with chain 4, 1 interactions with chain T, 1 interactions with chain S Hydrogen bonds: 4:G.140 Hydrophobic interactions: T:Y.46, S:F.4

4 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

PC1.14: 41 residues within 4Å: Chain 6: L.29, V.30, F.31 Chain 8: M.1, L.2, F.23, S.26, V.27, F.29, W.30, E.33, Y.34, M.37 Chain S: L.12, L.15, L.16, Y.19, L.68, Y.69, L.71, I.72, L.73, Y.74, Y.166, Y.195, Y.199, L.203 Chain W: F.33, A.44, L.45, P.46, L.51, Y.52, M.55, I.56, P.57, I.59, Y.60, F.61, R.64, L.111 21 PLIP interactions: 1 interactions with chain 6, 8 interactions with chain 8, 7 interactions with chain W, 5 interactions with chain S Hydrophobic interactions: 6:V.30, 8:L.2, 8:F.23, 8:W.30, 8:W.30, W:L.45, W:P.46, W:Y.52, W:M.55, W:I.56, W:Y.60, S:I.72 Hydrogen bonds: 8:W.30, 8:Y.34, 8:Y.34, W:Y.60, S:L.73, S:Y.166, S:Y.199 Salt bridges: 8:E.33 pi-Cation interactions: S:Y.166 PC1.15: 32 residues within 4Å: Chain 1: T.85, W.86, A.89, V.90, Y.92, F.93, W.94 Chain 7: W.65, Y.66, R.69, S.70, L.73, F.74 Chain S: Y.83, F.86, C.87, F.90 Chain T: T.34, L.37 Chain Z: F.32, T.33, I.35, F.36, L.37, K.39, H.40, M.41 Ligands: CDL.6, CDL.8, CDL.9, CDL.24, CDL.25 18 PLIP interactions: 7 interactions with chain Z, 4 interactions with chain S, 2 interactions with chain 7, 5 interactions with chain 1 Hydrophobic interactions: Z:F.32, Z:F.32, Z:I.35, Z:F.36, S:Y.83, S:F.86, S:F.90, S:F.90, 7:W.65, 7:Y.66, 1:W.86, 1:W.86 Salt bridges: Z:K.39, Z:K.39, Z:H.40 Hydrogen bonds: 1:A.89, 1:W.94 pi-Cation interactions: 1:W.94 PC1.17: 16 residues within 4Å: Chain 0: C.49, V.52, L.53, R.63, Q.64, Y.65, V.75, A.79, M.83 Chain 1: R.25, Y.70 Chain S: F.106, F.107 Ligands: CDL.6, CDL.16, CDL.24 2 PLIP interactions: 2 interactions with chain 0 Hydrogen bonds: 0:Q.64 Salt bridges: 0:R.63 PC1.23: 26 residues within 4Å: Chain 3: I.98, L.101, L.104, T.105, V.108 Chain 6: I.75, L.83, W.86, C.90, I.93, Y.94, Q.95, Y.97, E.98 Chain 8: P.18, M.21, F.22, F.25, F.29, K.40 Chain W: R.64, W.65, D.68, H.69, R.103, D.107 6 PLIP interactions: 2 interactions with chain W, 3 interactions with chain 6, 1 interactions with chain 8 Salt bridges: W:D.68, W:H.69, 6:E.98 Hydrophobic interactions: 6:W.86, 6:Y.97, 8:F.25

1 x UTP: URIDINE 5'-TRIPHOSPHATE(Non-covalent)

UTP.26: 14 residues within 4Å: Chain 9: N.208, E.209, E.210 Chain A: N.76, Y.79, K.88 Chain I: R.82 Chain J: V.78, R.82 Chain M: R.82 Chain N: R.82 Chain O: R.82 Chain P: R.82 Chain Q: R.82 9 PLIP interactions: 1 interactions with chain M, 1 interactions with chain O, 4 interactions with chain A, 1 interactions with chain Q, 1 interactions with chain P, 1 interactions with chain N Salt bridges: M:R.82, O:R.82, A:K.88, A:K.88, Q:R.82, P:R.82, N:R.82 Hydrogen bonds: A:N.76, A:Y.79

4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.27: 16 residues within 4Å: Ligands: MG.28 Chain a: F.187, R.208, Q.209, T.210, G.211, K.212, T.213, S.214, F.394, R.399, P.400, Q.464, K.465 Chain d: R.382, Y.394 17 PLIP interactions: 17 interactions with chain a Hydrogen bonds: a:Q.209, a:Q.209, a:T.210, a:T.210, a:G.211, a:K.212, a:T.213, a:T.213, a:S.214, a:S.214, a:R.399, a:Q.464, a:K.465 Salt bridges: a:K.212, a:K.212 pi-Cation interactions: a:K.465, a:K.465 ATP.29: 16 residues within 4Å: Ligands: MG.30 Chain b: F.187, R.208, Q.209, T.210, G.211, K.212, T.213, S.214, F.394, R.399, P.400, Q.464, K.465 Chain e: R.382, Y.394 15 PLIP interactions: 15 interactions with chain b Hydrogen bonds: b:Q.209, b:T.210, b:T.210, b:G.211, b:K.212, b:T.213, b:S.214, b:S.214, b:R.399, b:Q.464, b:K.465 Salt bridges: b:K.212, b:K.212 pi-Cation interactions: b:K.465, b:K.465 ATP.31: 17 residues within 4Å: Ligands: MG.32 Chain c: F.187, R.208, Q.209, T.210, G.211, K.212, T.213, S.214, F.394, R.399, P.400, Q.464, K.465, R.582 Chain f: R.382, D.385 13 PLIP interactions: 12 interactions with chain c, 1 interactions with chain f Hydrogen bonds: c:Q.209, c:T.210, c:G.211, c:K.212, c:T.213, c:T.213, c:S.214, c:S.214, c:Q.464, f:D.385 Salt bridges: c:K.212, c:K.212 pi-Cation interactions: c:K.465 ATP.33: 21 residues within 4Å: Ligands: MG.34 Chain c: S.381, V.408, R.410 Chain d: G.184, A.185, G.186, V.187, G.188, K.189, T.190, V.191, I.192, R.216, Y.337, Y.371, P.372, F.444, A.447, F.450, T.451 15 PLIP interactions: 11 interactions with chain d, 4 interactions with chain c Hydrogen bonds: d:G.186, d:V.187, d:G.188, d:K.189, d:T.190, d:V.191, c:S.381 Salt bridges: d:K.189, d:K.189, d:R.216, c:R.410, c:R.410, c:R.410 pi-Stacking: d:Y.371, d:Y.371

5 x MG: MAGNESIUM ION(Non-covalent)

MG.28: 2 residues within 4Å: Ligands: ATP.27 Chain a: T.213 1 PLIP interactions: 1 interactions with chain a Metal complexes: a:T.213 MG.30: 3 residues within 4Å: Ligands: ATP.29 Chain b: T.213, D.306 1 PLIP interactions: 1 interactions with chain b Metal complexes: b:T.213 MG.32: 3 residues within 4Å: Ligands: ATP.31 Chain c: T.213, N.249 1 PLIP interactions: 1 interactions with chain c Metal complexes: c:T.213 MG.34: 5 residues within 4Å: Ligands: ATP.33 Chain d: T.190, E.215, R.216, E.219 2 PLIP interactions: 2 interactions with chain d Metal complexes: d:T.190, d:E.215 MG.36: 5 residues within 4Å: Ligands: ADP.35 Chain e: T.190, R.216, E.219, D.282 1 PLIP interactions: 1 interactions with chain e Metal complexes: e:T.190

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.35: 18 residues within 4Å: Ligands: MG.36 Chain a: V.408, S.409, R.410 Chain e: G.184, A.185, G.186, V.187, G.188, K.189, T.190, V.191, E.219, Y.371, F.444, A.447, F.450, T.451 13 PLIP interactions: 11 interactions with chain e, 2 interactions with chain a Hydrogen bonds: e:G.184, e:G.186, e:V.187, e:G.188, e:K.189, e:T.190, e:T.190, e:V.191, e:Y.371 Salt bridges: e:K.189, a:R.410, a:R.410 pi-Stacking: e:Y.371

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gahura, O. et al., An ancestral interaction module promotes oligomerization in divergent mitochondrial ATP synthases. Nat Commun (2022)

Release Date

2022-10-26

Peptides

ATP synthase, epsilon chain, putative: A
ATP synthase subunit epsilon, mitochondrial: B
ATP synthase subunit p18, mitochondrial: CDF
subunit-e: E2
subunit-g: G3
OSCP: H
ATPase subunit 9, putative: IJKLMNOPQR
ATP synthase subunit a: S
subunit-8: T
subunit-d: U
ATPTB1: V
subunit-f: W
ATPTB3: X
ATPTB4: Y
subunit-i/j: Z
ATPTB6: 0
subunit-k: 1
ATPTB11: 4
ATPTB12: 5
subunit-b: 6
ATPEG3: 7
ATPEG4: 8
ATP synthase gamma subunit: 9
ATP synthase subunit alpha, mitochondrial: abc
ATP synthase subunit beta, mitochondrial: def

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H1

B
I1

C
J1

D
K1

F
L1

E
L

2
l

G
M

3
m

H
M1

I
O1

J
P1

K
Q1

L
R1

M
S1

N
T1

O
U1

P
V1

Q
W1

R
X1

S
a

T
c

U
d

V
e

W
f

X
g

Y
h

Z
i

0
j

1
k

4
n

5
o

6
p

7
q

8
r

9
G1

a
A1

b
B1

c
C1

d
D1

e
E1

f
F1

Membrane

We predict this structure to be a membrane protein.
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ATP synthase, epsilon chain, putative

ATP synthase subunit epsilon, mitochondrial

ATP synthase subunit p18, mitochondrial

subunit-e

subunit-g

OSCP

ATPase subunit 9, putative

ATP synthase subunit a

subunit-8

subunit-d

ATPTB1

subunit-f

ATPTB3

ATPTB4

subunit-i/j

ATPTB6

subunit-k

ATPTB11

ATPTB12

subunit-b

ATPEG3

ATPEG4

ATP synthase gamma subunit

ATP synthase subunit alpha, mitochondrial

ATP synthase subunit beta, mitochondrial

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