SMTL ID : 8aph.1

rotational state 2c of the Trypanosoma brucei mitochondrial ATP synthase dimer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-3-1-10-1-3-3-mer

Ligands

14 x CDL: CARDIOLIPIN(Non-covalent)

CDL.1: 28 residues within 4Å: Chain A: H.11, N.15, V.16, Y.18, F.19, A.22, W.23, V.26 Chain B: R.72, K.106, V.109, L.110, I.113, V.116, L.117, I.122 Chain C: V.176, F.177, F.181 Chain N: L.16, A.54, V.55, T.58, K.59 Ligands: CDL.2, PEE.3, CDL.21, PEE.22 17 PLIP interactions: 7 interactions with chain B, 9 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: B:L.110, B:I.113, B:L.117, A:N.15, A:Y.18, A:F.19, A:F.19, A:F.19, A:F.19, A:F.19, C:F.177 Salt bridges: B:R.72, B:K.106, B:K.106, B:K.106 Hydrogen bonds: A:N.15, A:Y.18 CDL.2: 29 residues within 4Å: Chain B: T.58, K.59, L.62, R.66 Chain N: L.117 Chain Q: M.28, L.29, S.79, S.80, W.81, N.82, F.84, L.85, V.88, F.92 Chain S: R.10, F.11, S.12, F.14, F.23, I.24, V.27, L.31, G.32, P.35 Ligands: CDL.1, PEE.3, CDL.20, PEE.22 23 PLIP interactions: 10 interactions with chain Q, 7 interactions with chain S, 2 interactions with chain N, 4 interactions with chain B Hydrophobic interactions: Q:L.29, Q:W.81, Q:W.81, Q:F.84, Q:F.84, Q:L.85, S:F.11, S:F.11, S:F.14, S:F.23, S:V.27, S:L.31, S:P.35, N:L.117, B:L.62 Hydrogen bonds: Q:S.79, Q:S.79, Q:W.81, Q:N.82, B:R.66 Salt bridges: N:K.106, B:K.59, B:R.66 CDL.4: 30 residues within 4Å: Chain C: F.2, L.3, F.4, F.5, F.6, C.7, F.10, R.13 Chain D: S.39, M.42, V.43, Y.46, W.51, M.54 Chain J: W.38 Chain O: Q.114, G.117, Y.118, V.120, A.121, Y.124, L.125, H.144, I.146, M.147 Chain R: L.27, L.29 Ligands: CDL.12, Q7G.23, CDL.25 12 PLIP interactions: 7 interactions with chain C, 1 interactions with chain R, 3 interactions with chain O, 1 interactions with chain D Hydrophobic interactions: C:F.2, C:F.6, C:F.10, R:L.29, O:A.121, O:Y.124, D:M.42 Hydrogen bonds: C:F.5, C:C.7, O:Y.118 Salt bridges: C:R.13, C:R.13 CDL.5: 45 residues within 4Å: Chain D: F.49, F.50, M.54 Chain F: H.100, C.101, G.103, A.104, A.107, T.108, Y.111, F.115, W.125, Y.147, R.212, R.216, R.220, P.225, T.226, F.227, P.228, M.229, L.230 Chain J: L.11, P.12, Q.15, L.16, K.17, F.19, T.20, Q.21, P.24, A.27, A.28, I.31 Chain R: W.47, P.58, L.59, L.62 Ligands: CDL.6, CDL.7, CDL.8, CDL.9, Q7G.11, CDL.12, CDL.25 28 PLIP interactions: 17 interactions with chain F, 3 interactions with chain D, 6 interactions with chain J, 2 interactions with chain R Hydrophobic interactions: F:A.104, F:A.107, F:F.115, F:P.225, F:F.227, F:F.227, F:F.227, F:F.227, D:F.50, D:F.50, D:F.50, J:P.12, J:L.16, J:F.19, J:A.27, R:W.47, R:P.58 Hydrogen bonds: F:R.212, F:T.226, F:T.226, F:T.226, F:F.227, F:M.229, J:T.20, J:Q.21 Salt bridges: F:R.216, F:R.216, F:R.220 CDL.6: 38 residues within 4Å: Chain C: C.104, F.106 Chain F: F.55, H.60, K.61, R.62, L.230, A.231, L.233, C.234 Chain K: F.48, C.49, V.52, P.95, Q.96, G.97, R.100, V.101, T.104, G.105, T.108, Y.109, F.112, V.113 Chain L: F.78, W.82 Chain R: P.58, Q.61, L.62, W.65 Ligands: CDL.5, CDL.7, CDL.8, CDL.9, PC1.15, CDL.16, CDL.17, PC1.18 22 PLIP interactions: 12 interactions with chain K, 7 interactions with chain F, 3 interactions with chain R Hydrophobic interactions: K:F.48, K:V.52, K:V.101, K:T.108, K:Y.109, K:F.112, K:F.112, F:L.230, R:Q.61, R:L.62, R:W.65 Hydrogen bonds: K:Q.96, K:G.97, K:R.100, F:R.62, F:R.62, F:A.231 Salt bridges: K:R.100, K:R.100, F:K.61, F:K.61, F:R.62 CDL.7: 48 residues within 4Å: Chain F: F.15, L.19, F.22, T.26, A.29, Y.30, W.33, Y.91, K.92, M.95, W.96, M.98, A.99, H.100, A.102, G.103, L.105, L.106, A.107, P.228, L.230, T.237, R.238, D.241 Chain K: L.47, Y.93, P.95, Q.96, G.97, Y.98, G.99, V.101, L.102, I.103, G.105, V.106, P.107, Y.109, I.110, L.111 Chain R: W.56, S.57, P.58 Ligands: CDL.5, CDL.6, CDL.8, CDL.9, LMT.10 24 PLIP interactions: 11 interactions with chain K, 12 interactions with chain F, 1 interactions with chain R Hydrophobic interactions: K:Y.98, K:L.102, K:L.102, K:L.102, K:I.103, K:I.103, K:V.106, K:Y.109, K:Y.109, F:F.22, F:Y.91, F:M.98, F:A.99, F:A.102, F:P.228, R:W.56 Hydrogen bonds: K:Q.96, K:G.99, F:W.33, F:W.96 Salt bridges: F:K.92, F:K.92, F:R.238, F:R.238 CDL.8: 42 residues within 4Å: Chain F: M.1, Q.2, G.3, F.15, C.101, A.104, L.105, A.112, I.113, F.115, G.116, L.117, F.118, W.119, L.120, N.122, W.125, R.150, F.227 Chain G: V.2, L.3, F.4, S.5, T.6, Y.7 Chain J: Y.3, P.12, V.13, L.16, K.17, T.20, A.28 Chain R: V.43, W.47 Ligands: CDL.5, CDL.6, CDL.7, CDL.9, Q7G.11, CDL.12, PC1.15, CDL.25 19 PLIP interactions: 11 interactions with chain F, 4 interactions with chain G, 2 interactions with chain J, 2 interactions with chain R Hydrophobic interactions: F:F.15, F:A.104, F:A.112, F:F.118, F:F.118, F:W.119, F:L.120, F:F.227, G:F.4, J:L.16, R:W.47, R:W.47 Hydrogen bonds: F:G.3, F:N.122, G:V.2, G:T.6, G:Y.7 Salt bridges: F:R.150, J:K.17 CDL.9: 36 residues within 4Å: Chain C: F.47, D.48, F.98, L.99, F.102, L.103, C.104 Chain F: K.61, R.212, K.213, L.230, A.231, R.232 Chain J: P.24, M.25, A.28, V.29, I.31, F.32, I.35 Chain K: M.41, S.44, G.45, F.48, T.108, F.112 Chain L: T.85, W.86 Chain R: L.62 Ligands: CDL.5, CDL.6, CDL.7, CDL.8, PC1.15, CDL.17, CDL.25 12 PLIP interactions: 4 interactions with chain F, 1 interactions with chain R, 4 interactions with chain J, 2 interactions with chain C, 1 interactions with chain K Hydrogen bonds: F:R.232 Salt bridges: F:K.61, F:R.212, F:R.212 Hydrophobic interactions: R:L.62, J:A.28, J:I.31, J:I.31, J:F.32, C:F.98, C:F.102, K:F.48 CDL.12: 22 residues within 4Å: Chain G: R.8, S.10, R.11, L.12, V.13, S.14, F.17 Chain J: R.10, L.11, P.12 Chain O: I.106, R.109, K.110, F.113, Q.114, L.116, G.117, V.120 Ligands: CDL.4, CDL.5, CDL.8, CDL.25 16 PLIP interactions: 7 interactions with chain G, 6 interactions with chain O, 3 interactions with chain J Hydrophobic interactions: G:V.13, G:F.17, O:F.113, O:F.113, O:V.120 Hydrogen bonds: G:R.8, G:L.12, G:V.13, O:R.109, J:R.10, J:R.10, J:L.11 Salt bridges: G:R.8, G:R.11, O:K.110, O:K.110 CDL.16: 38 residues within 4Å: Chain C: F.106, F.126, F.130 Chain K: R.63, Q.64, Y.65, G.66, L.67, P.68, H.69, F.70, F.71, I.73, V.75, D.76, A.79, K.80 Chain L: R.25, F.50, L.53, I.56, M.59, M.60, A.63, M.66, R.68, Y.70, L.71, I.72, T.74, P.75, T.76, F.78, T.79, W.82 Ligands: CDL.6, CDL.17, PC1.18 27 PLIP interactions: 15 interactions with chain L, 9 interactions with chain K, 3 interactions with chain C Hydrophobic interactions: L:F.50, L:L.53, L:M.59, L:L.71, L:I.72, L:T.74, L:P.75, L:F.78, L:W.82, L:W.82, K:Y.65, K:F.70, K:K.80, K:K.80, C:F.106, C:F.126, C:F.130 Hydrogen bonds: L:R.68, L:R.68, K:P.68, K:P.68, K:F.70 Salt bridges: L:R.25, L:R.68, L:R.68, K:R.63, K:K.80 CDL.17: 27 residues within 4Å: Chain C: F.98, C.101, F.102, C.104, F.106 Chain K: Q.34, R.37, R.38, M.41, A.42, G.45, A.46, C.49 Chain L: F.78, I.81, W.82, T.85, W.86, K.87, V.90 Chain R: R.69, L.73 Ligands: CDL.6, CDL.9, PC1.15, CDL.16, PC1.18 12 PLIP interactions: 5 interactions with chain K, 3 interactions with chain R, 3 interactions with chain L, 1 interactions with chain C Hydrogen bonds: K:Q.34, K:R.38, L:W.82, L:W.86 Salt bridges: K:R.37, K:R.38, K:R.38, R:R.69, R:R.69, R:R.69, L:K.87 Hydrophobic interactions: C:F.102 CDL.20: 31 residues within 4Å: Chain B: L.16, A.54, V.55, T.58, K.59 Chain M: H.11, N.15, V.16, Y.18, F.19, A.22, W.23, V.26 Chain N: R.72, K.106, V.109, L.110, I.113, V.116, L.117, I.122 Chain Q: L.85, V.88, E.89, F.92, F.96 Chain S: I.39 Ligands: CDL.2, PEE.3, CDL.21, PEE.22 19 PLIP interactions: 7 interactions with chain N, 4 interactions with chain Q, 8 interactions with chain M Hydrophobic interactions: N:L.110, N:V.116, N:L.117, Q:E.89, Q:F.92, Q:F.92, Q:F.92, M:N.15, M:Y.18, M:F.19, M:F.19, M:F.19, M:F.19 Salt bridges: N:R.72, N:K.106, N:K.106, N:K.106 Hydrogen bonds: M:N.15, M:Y.18 CDL.21: 9 residues within 4Å: Chain B: L.117 Chain N: T.58, K.59, L.62, R.66 Ligands: CDL.1, PEE.3, CDL.20, PEE.22 5 PLIP interactions: 4 interactions with chain N, 1 interactions with chain B Hydrophobic interactions: N:L.62 Hydrogen bonds: N:R.66 Salt bridges: N:K.59, N:R.66, B:K.106 CDL.25: 33 residues within 4Å: Chain D: M.42, Y.45, Y.46, F.49, F.50 Chain J: I.31, I.34, I.35, W.38, K.39 Chain K: E.13 Chain R: R.33, Y.36, V.37, W.40, L.41, V.43, K.44, W.47, L.48, L.59, L.62, G.63, Y.66, S.67, R.71 Ligands: CDL.4, CDL.5, CDL.8, CDL.9, CDL.12, PC1.15, Q7G.23 21 PLIP interactions: 3 interactions with chain J, 4 interactions with chain D, 2 interactions with chain K, 12 interactions with chain R Hydrophobic interactions: J:I.35, D:Y.45, D:F.49, D:F.50, D:F.50, R:W.40, R:W.40, R:W.40, R:W.47, R:L.48, R:Y.66 Salt bridges: J:K.39, J:K.39, R:R.33, R:K.44 Hydrogen bonds: K:E.13, K:E.13, R:W.40, R:S.67, R:S.67, R:R.71

3 x PEE: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)

PEE.3: 25 residues within 4Å: Chain A: V.26, Y.30, K.33 Chain B: L.117, G.118, Q.120 Chain C: F.173, Y.174, V.176, F.177, C.178 Chain N: L.117, Y.144 Chain S: P.35, M.38, I.39, N.42, A.43, R.44, L.46 Ligands: CDL.1, CDL.2, CDL.20, CDL.21, PEE.22 11 PLIP interactions: 3 interactions with chain A, 2 interactions with chain S, 1 interactions with chain B, 4 interactions with chain C, 1 interactions with chain N Hydrophobic interactions: A:V.26, A:Y.30, S:P.35, C:F.173, C:F.173, C:Y.174, C:F.177, N:L.117 Salt bridges: A:K.33 Hydrogen bonds: S:A.43, B:Q.120 PEE.13: 8 residues within 4Å: Chain F: W.5 Chain G: V.2, L.3, F.4, S.5, S.10, L.12 Chain J: R.10 2 PLIP interactions: 1 interactions with chain G, 1 interactions with chain J Hydrogen bonds: G:S.5 Salt bridges: J:R.10 PEE.22: 13 residues within 4Å: Chain B: L.117, Y.144 Chain M: V.26, Y.30, K.33 Chain N: L.117, G.118, Q.120 Ligands: CDL.1, CDL.2, PEE.3, CDL.20, CDL.21 5 PLIP interactions: 1 interactions with chain B, 3 interactions with chain M, 1 interactions with chain N Hydrophobic interactions: B:L.117, M:V.26, M:Y.30 Salt bridges: M:K.33 Hydrogen bonds: N:Q.120

2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.10: 11 residues within 4Å: Chain F: Y.30, W.33, L.34, Y.37, N.38, Q.41, K.42 Chain K: W.91, Y.93, I.103 Ligands: CDL.7 2 PLIP interactions: 1 interactions with chain K, 1 interactions with chain F Hydrophobic interactions: K:W.91 Hydrogen bonds: F:N.38 LMT.19: 9 residues within 4Å: Chain K: K.31, G.32, W.35, W.36, F.39, V.43, L.111, L.115, R.119 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:W.36

2 x Q7G: 2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside(Non-covalent)

Q7G.11: 10 residues within 4Å: Chain F: G.110, Y.111, I.113, P.114, F.115 Chain R: W.47, W.51, Y.52 Ligands: CDL.5, CDL.8 4 PLIP interactions: 4 interactions with chain R Hydrophobic interactions: R:W.47, R:W.51, R:Y.52, R:Y.52 Q7G.23: 16 residues within 4Å: Chain C: F.4, F.6 Chain D: Y.46 Chain O: Y.124, M.129, P.130, G.137, L.138, S.139, G.140, P.141, H.144 Chain R: A.26, L.27 Ligands: CDL.4, CDL.25 2 PLIP interactions: 1 interactions with chain O, 1 interactions with chain D Hydrogen bonds: O:G.140 Hydrophobic interactions: D:Y.46

4 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

PC1.14: 41 residues within 4Å: Chain C: L.12, L.15, L.16, Y.19, L.68, Y.69, L.71, I.72, L.73, Y.74, Y.166, Y.195, Y.199, L.203 Chain G: F.33, A.44, L.45, P.46, L.51, Y.52, M.55, I.56, P.57, I.59, Y.60, F.61, R.64, L.111 Chain Q: L.29, V.30, F.31 Chain S: M.1, L.2, F.23, S.26, V.27, F.29, W.30, E.33, Y.34, M.37 19 PLIP interactions: 7 interactions with chain G, 7 interactions with chain S, 4 interactions with chain C, 1 interactions with chain Q Hydrophobic interactions: G:L.45, G:P.46, G:Y.52, G:M.55, G:I.56, G:Y.60, S:F.23, S:W.30, S:W.30, Q:V.30 Hydrogen bonds: G:Y.60, S:W.30, S:Y.34, S:Y.34, C:L.73, C:Y.166, C:Y.199 Salt bridges: S:E.33 pi-Cation interactions: C:Y.166 PC1.15: 32 residues within 4Å: Chain C: Y.83, F.86, C.87, F.90 Chain D: T.34, L.37 Chain J: F.32, T.33, I.35, F.36, L.37, K.39, H.40, M.41 Chain L: T.85, W.86, A.89, V.90, Y.92, F.93, W.94 Chain R: W.65, Y.66, R.69, S.70, L.73, F.74 Ligands: CDL.6, CDL.8, CDL.9, CDL.17, CDL.25 18 PLIP interactions: 4 interactions with chain C, 8 interactions with chain J, 5 interactions with chain L, 1 interactions with chain R Hydrophobic interactions: C:Y.83, C:F.86, C:F.90, C:F.90, J:F.32, J:F.32, J:F.32, J:I.35, J:F.36, L:W.86, L:W.86, R:Y.66 Salt bridges: J:K.39, J:K.39, J:H.40 Hydrogen bonds: L:A.89, L:W.94 pi-Cation interactions: L:W.94 PC1.18: 16 residues within 4Å: Chain C: F.106, F.107 Chain K: C.49, V.52, L.53, R.63, Q.64, Y.65, V.75, A.79, M.83 Chain L: R.25, Y.70 Ligands: CDL.6, CDL.16, CDL.17 2 PLIP interactions: 2 interactions with chain K Hydrogen bonds: K:Q.64 Salt bridges: K:R.63 PC1.24: 26 residues within 4Å: Chain G: R.64, W.65, D.68, H.69, R.103, D.107 Chain N: I.98, L.101, L.104, T.105, V.108 Chain Q: I.75, L.83, W.86, C.90, I.93, Y.94, Q.95, Y.97, E.98 Chain S: P.18, M.21, F.22, F.25, F.29, K.40 7 PLIP interactions: 4 interactions with chain Q, 2 interactions with chain G, 1 interactions with chain S Hydrophobic interactions: Q:W.86, Q:I.93, Q:Y.97, S:F.25 Salt bridges: Q:E.98, G:D.68, G:H.69

1 x UTP: URIDINE 5'-TRIPHOSPHATE(Non-covalent)

UTP.26: 15 residues within 4Å: Chain 0: V.78, R.82 Chain 1: V.78 Chain 3: R.82 Chain 4: R.82 Chain 5: R.82 Chain 6: R.82 Chain 7: R.82 Chain 9: N.208, E.209, E.210 Chain T: N.76, Y.79, K.88 Chain Z: R.82 16 PLIP interactions: 6 interactions with chain T, 2 interactions with chain 4, 1 interactions with chain 9, 1 interactions with chain 6, 2 interactions with chain 5, 1 interactions with chain 7, 3 interactions with chain 0 Hydrogen bonds: T:N.76, T:Y.79, T:Y.79, 9:E.209, 5:R.82, 0:R.82, 0:R.82 Salt bridges: T:K.88, T:K.88, T:K.88, 4:R.82, 4:R.82, 6:R.82, 5:R.82, 7:R.82 pi-Cation interactions: 0:R.82

4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.27: 16 residues within 4Å: Ligands: MG.28 Chain a: F.187, R.208, Q.209, T.210, G.211, K.212, T.213, S.214, F.394, R.399, P.400, Q.464, K.465 Chain d: R.382, Y.394 17 PLIP interactions: 17 interactions with chain a Hydrogen bonds: a:Q.209, a:Q.209, a:T.210, a:T.210, a:G.211, a:K.212, a:T.213, a:T.213, a:S.214, a:S.214, a:R.399, a:Q.464, a:K.465 Salt bridges: a:K.212, a:K.212 pi-Cation interactions: a:K.465, a:K.465 ATP.29: 16 residues within 4Å: Ligands: MG.30 Chain b: F.187, R.208, Q.209, T.210, G.211, K.212, T.213, S.214, F.394, R.399, P.400, Q.464, K.465 Chain e: R.382, Y.394 15 PLIP interactions: 15 interactions with chain b Hydrogen bonds: b:Q.209, b:T.210, b:T.210, b:G.211, b:K.212, b:T.213, b:S.214, b:S.214, b:R.399, b:Q.464, b:K.465 Salt bridges: b:K.212, b:K.212 pi-Cation interactions: b:K.465, b:K.465 ATP.31: 18 residues within 4Å: Ligands: MG.32 Chain c: F.187, R.208, Q.209, T.210, G.211, K.212, T.213, S.214, Q.245, F.394, R.399, P.400, Q.464, K.465, R.582 Chain f: R.382, D.385 15 PLIP interactions: 14 interactions with chain c, 1 interactions with chain f Hydrogen bonds: c:Q.209, c:T.210, c:G.211, c:K.212, c:T.213, c:T.213, c:S.214, c:S.214, c:R.399, c:Q.464, f:D.385 Salt bridges: c:K.212, c:K.212 pi-Cation interactions: c:K.465, c:K.465 ATP.33: 21 residues within 4Å: Ligands: MG.34 Chain c: I.380, S.381, V.408, R.410 Chain d: A.185, G.186, V.187, G.188, K.189, T.190, V.191, I.192, R.216, Y.337, Y.371, P.372, F.444, A.447, F.450, T.451 15 PLIP interactions: 10 interactions with chain d, 5 interactions with chain c Hydrogen bonds: d:G.186, d:V.187, d:G.188, d:K.189, d:T.190, d:V.191, c:S.381, c:S.381 Salt bridges: d:K.189, d:K.189, d:R.216, c:R.410, c:R.410, c:R.410 pi-Stacking: d:Y.371

5 x MG: MAGNESIUM ION(Non-covalent)

MG.28: 3 residues within 4Å: Ligands: ATP.27 Chain a: T.213, D.306 1 PLIP interactions: 1 interactions with chain a Metal complexes: a:T.213 MG.30: 3 residues within 4Å: Ligands: ATP.29 Chain b: T.213, D.306 1 PLIP interactions: 1 interactions with chain b Metal complexes: b:T.213 MG.32: 4 residues within 4Å: Ligands: ATP.31 Chain c: T.213, N.249, D.306 1 PLIP interactions: 1 interactions with chain c Metal complexes: c:T.213 MG.34: 5 residues within 4Å: Ligands: ATP.33 Chain d: T.190, E.215, R.216, E.219 1 PLIP interactions: 1 interactions with chain d Metal complexes: d:T.190 MG.36: 6 residues within 4Å: Ligands: ADP.35 Chain e: T.190, E.215, R.216, E.219, N.283 1 PLIP interactions: 1 interactions with chain e Metal complexes: e:T.190

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.35: 18 residues within 4Å: Ligands: MG.36 Chain a: V.408, S.409, R.410 Chain e: G.184, A.185, G.186, V.187, G.188, K.189, T.190, V.191, E.219, Y.371, F.444, A.447, F.450, T.451 13 PLIP interactions: 11 interactions with chain e, 2 interactions with chain a Hydrogen bonds: e:G.184, e:G.186, e:V.187, e:G.188, e:K.189, e:T.190, e:T.190, e:V.191, e:Y.371 Salt bridges: e:K.189, a:R.410, a:R.410 pi-Stacking: e:Y.371

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gahura, O. et al., An ancestral interaction module promotes oligomerization in divergent mitochondrial ATP synthases. Nat Commun (2022)

Release Date

2022-10-26

Peptides

subunit-e: AM
subunit-g: BN
ATP synthase subunit a: C
subunit-8: D
subunit-d: E
ATPTB1: F
subunit-f: G
ATPTB3: H
ATPTB4: I
subunit-i/j: J
ATPTB6: K
subunit-k: L
ATPTB11: O
ATPTB12: P
subunit-b: Q
ATPEG3: R
ATPEG4: S
ATP synthase, epsilon chain, putative: T
ATP synthase subunit epsilon, mitochondrial: U
ATP synthase subunit p18, mitochondrial: VWX
OSCP: Y
ATPase subunit 9, putative: Z012345678
ATP synthase gamma subunit: 9
ATP synthase subunit alpha, mitochondrial: abc
ATP synthase subunit beta, mitochondrial: def

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

M
l

B
M

N
m

C
a

D
c

E
d

F
e

G
f

H
g

I
h

J
i

K
j

L
k

O
n

P
o

Q
p

R
q

S
r

T
H1

U
I1

V
J1

W
K1

X
L1

Y
M1

Z
O1

0
P1

1
Q1

2
R1

3
S1

4
T1

5
U1

6
V1

7
W1

8
X1

9
G1

a
A1

b
B1

c
C1

d
D1

e
E1

f
F1

Membrane

We predict this structure to be a membrane protein.
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subunit-e

subunit-g

ATP synthase subunit a

subunit-8

subunit-d

ATPTB1

subunit-f

ATPTB3

ATPTB4

subunit-i/j

ATPTB6

subunit-k

ATPTB11

ATPTB12

subunit-b

ATPEG3

ATPEG4

ATP synthase, epsilon chain, putative

ATP synthase subunit epsilon, mitochondrial

ATP synthase subunit p18, mitochondrial

OSCP

ATPase subunit 9, putative

ATP synthase gamma subunit

ATP synthase subunit alpha, mitochondrial

ATP synthase subunit beta, mitochondrial

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