SMTL ID : 8bbo.1

SARS-CoV-2 Delta-RBD complexed with BA.2-36 Fab

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: F.16, N.17, L.42 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.16, A:L.42 Hydrogen bonds: A:N.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dijokaite-Guraliuc, A. et al., Rapid escape of new SARS-CoV-2 Omicron variants from BA.2-directed antibody responses. Cell Rep (2023)

Release Date

2023-03-22

Peptides

Spike glycoprotein: A
IGH@ protein: B
Immunoglobulin kappa light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
H

C
L

Spike glycoprotein

IGH@ protein

Immunoglobulin kappa light chain

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