SMTL ID : 8cbe.1

SARS-CoV-2 Delta-RBD complexed with BA.4/5-2 and Beta-49 Fabs

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.16 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.1: 9 residues within 4Å: Chain C: F.16, N.17, A.18, S.45, S.47 Chain D: Y.50, T.57 Chain E: A.103, I.105 4 PLIP interactions: 2 interactions with chain C, 1 interactions with chain E, 1 interactions with chain D Hydrogen bonds: C:S.47, C:S.47, D:T.57 Hydrophobic interactions: E:A.103, E:I.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, C. et al., Emerging variants develop total escape from potent monoclonal antibodies induced by BA.4/5 infection. Nat Commun (2024)

Release Date

2024-02-07

Peptides

BA.4/5-2 heavy chain: A
BA.4/5-2 light chain: B
Spike protein S1: C
Beta-49 light chain: D
Beta-49 heavy chain: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
E

D
B

E
A

BA.4/5-2 heavy chain

BA.4/5-2 light chain

Spike protein S1

Beta-49 light chain

Beta-49 heavy chain

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