SMTL ID : 8qzr.1 (1 other biounit)

SARS-CoV-2 delta RBD complexed with BA.4/5-9 Fab

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.77 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain C: G.13, F.16, N.17 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:F.16 Hydrogen bonds: C:N.17

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain B: Q.65 Chain C: G.150, S.151, F.160, N.161 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.151, C:N.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, C. et al., Emerging variants develop total escape from potent monoclonal antibodies induced by BA.4/5 infection. Nat Commun (2024)

Release Date

2024-04-03

Peptides

BA.4/5-9 light chain: A
BA.4/5-9 heavy chain: B
Spike protein S1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
C

BA.4/5-9 light chain

BA.4/5-9 heavy chain

Spike protein S1

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