SMTL ID : 8bpo.1

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

214 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 4 residues within 4Å: Chain A: U.3956, A.3994 Chain F: K.373, G.375 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:K.373 MG.2: 1 residues within 4Å: Chain A: G.1394 No protein-ligand interaction detected (PLIP) MG.3: 4 residues within 4Å: Chain A: C.1225, G.1247, G.1248 Chain T: N.7 1 PLIP interactions: 1 interactions with chain T Metal complexes: T:N.7 MG.4: 5 residues within 4Å: Chain 3: K.7, G.18 Chain A: A.1393, G.1726, G.1727 1 PLIP interactions: 1 interactions with chain 3 Metal complexes: 3:G.18 MG.5: 6 residues within 4Å: Chain 7: I.41, D.42 Chain A: U.880, A.883, G.1423, C.1424 No protein-ligand interaction detected (PLIP) MG.6: 2 residues within 4Å: Chain A: A.1093 Chain c: Q.30 No protein-ligand interaction detected (PLIP) MG.7: 4 residues within 4Å: Chain A: G.350, C.352 Chain G: G.98, G.99 No protein-ligand interaction detected (PLIP) MG.8: 1 residues within 4Å: Chain A: U.3237 No protein-ligand interaction detected (PLIP) MG.9: 3 residues within 4Å: Chain A: A.38, G.40, C.41 No protein-ligand interaction detected (PLIP) MG.10: 5 residues within 4Å: Chain A: U.43, A.44, U.45 Chain Q: K.83, V.85 No protein-ligand interaction detected (PLIP) MG.11: 2 residues within 4Å: Chain A: G.48, U.96 No protein-ligand interaction detected (PLIP) MG.12: 1 residues within 4Å: Chain A: A.51 No protein-ligand interaction detected (PLIP) MG.13: 1 residues within 4Å: Chain A: A.56 No protein-ligand interaction detected (PLIP) MG.14: 1 residues within 4Å: Chain A: A.61 No protein-ligand interaction detected (PLIP) MG.15: 3 residues within 4Å: Chain A: A.62, C.326, U.327 No protein-ligand interaction detected (PLIP) MG.16: 4 residues within 4Å: Chain A: C.83, G.85, G.941, C.942 No protein-ligand interaction detected (PLIP) MG.17: 2 residues within 4Å: Chain A: C.100, A.101 No protein-ligand interaction detected (PLIP) MG.18: 1 residues within 4Å: Chain A: A.105 No protein-ligand interaction detected (PLIP) MG.19: 4 residues within 4Å: Chain A: C.112, G.154, C.155, G.156 No protein-ligand interaction detected (PLIP) MG.20: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.21: 2 residues within 4Å: Chain A: A.192, G.234 No protein-ligand interaction detected (PLIP) MG.22: 3 residues within 4Å: Chain A: G.223, G.224, A.229 No protein-ligand interaction detected (PLIP) MG.23: 2 residues within 4Å: Chain A: U.225, A.229 No protein-ligand interaction detected (PLIP) MG.24: 1 residues within 4Å: Chain A: C.276 No protein-ligand interaction detected (PLIP) MG.25: 2 residues within 4Å: Chain A: U.281, G.282 No protein-ligand interaction detected (PLIP) MG.26: 1 residues within 4Å: Chain A: U.285 No protein-ligand interaction detected (PLIP) MG.27: 3 residues within 4Å: Chain A: U.310, U.3682, U.3683 No protein-ligand interaction detected (PLIP) MG.28: 1 residues within 4Å: Ligands: MG.164 No protein-ligand interaction detected (PLIP) MG.29: 2 residues within 4Å: Chain A: C.344, C.345 No protein-ligand interaction detected (PLIP) MG.30: 2 residues within 4Å: Chain A: G.350, A.353 No protein-ligand interaction detected (PLIP) MG.31: 3 residues within 4Å: Chain A: A.404, G.1773, G.1774 No protein-ligand interaction detected (PLIP) MG.32: 4 residues within 4Å: Chain A: A.404, G.409, U.410, G.1774 No protein-ligand interaction detected (PLIP) MG.33: 4 residues within 4Å: Chain A: C.408, G.409, U.410, G.411 No protein-ligand interaction detected (PLIP) MG.34: 5 residues within 4Å: Chain A: G.417, U.418 Chain C: A.9, G.10, C.11 No protein-ligand interaction detected (PLIP) MG.35: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.36: 5 residues within 4Å: Chain A: C.1224, C.1225, G.1721, A.1722, G.1723 No protein-ligand interaction detected (PLIP) MG.37: 2 residues within 4Å: Chain A: A.1725, G.1726 No protein-ligand interaction detected (PLIP) MG.38: 3 residues within 4Å: Chain A: C.1157, A.1810, A.2241 No protein-ligand interaction detected (PLIP) MG.39: 2 residues within 4Å: Chain A: A.1813, U.2269 No protein-ligand interaction detected (PLIP) MG.40: 2 residues within 4Å: Chain A: C.1836, C.2260 No protein-ligand interaction detected (PLIP) MG.41: 1 residues within 4Å: Chain A: A.1844 No protein-ligand interaction detected (PLIP) MG.42: 3 residues within 4Å: Chain A: C.1853, C.1854, A.1871 No protein-ligand interaction detected (PLIP) MG.43: 2 residues within 4Å: Chain A: C.1865, A.1866 No protein-ligand interaction detected (PLIP) MG.44: 3 residues within 4Å: Chain A: C.1888, C.1889, G.1953 No protein-ligand interaction detected (PLIP) MG.45: 2 residues within 4Å: Chain A: G.1957, G.1959 No protein-ligand interaction detected (PLIP) MG.46: 2 residues within 4Å: Chain A: A.2119, G.2120 No protein-ligand interaction detected (PLIP) MG.47: 4 residues within 4Å: Chain A: G.1845, A.1972, A.2226, C.2227 No protein-ligand interaction detected (PLIP) MG.48: 3 residues within 4Å: Chain A: U.2231, A.2232, U.2271 No protein-ligand interaction detected (PLIP) MG.49: 1 residues within 4Å: Chain A: C.2235 No protein-ligand interaction detected (PLIP) MG.50: 4 residues within 4Å: Chain A: G.1158, A.1159, G.2236, C.2237 No protein-ligand interaction detected (PLIP) MG.51: 3 residues within 4Å: Chain A: A.2288, G.2291, G.3161 No protein-ligand interaction detected (PLIP) MG.52: 1 residues within 4Å: Chain A: A.2300 No protein-ligand interaction detected (PLIP) MG.53: 1 residues within 4Å: Chain A: A.2951 No protein-ligand interaction detected (PLIP) MG.54: 2 residues within 4Å: Chain A: U.2953, C.2954 No protein-ligand interaction detected (PLIP) MG.55: 3 residues within 4Å: Chain A: G.2956, C.2958, A.2970 No protein-ligand interaction detected (PLIP) MG.56: 4 residues within 4Å: Chain A: A.2964, A.2965, U.2966, U.2967 No protein-ligand interaction detected (PLIP) MG.57: 4 residues within 4Å: Chain A: C.3023, U.3026, G.3027, U.3067 No protein-ligand interaction detected (PLIP) MG.58: 5 residues within 4Å: Chain A: G.3011, A.3069, A.3070, C.3071, U.3140 No protein-ligand interaction detected (PLIP) MG.59: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.60: 2 residues within 4Å: Chain A: U.3100, G.3133 No protein-ligand interaction detected (PLIP) MG.61: 1 residues within 4Å: Chain A: A.3105 No protein-ligand interaction detected (PLIP) MG.62: 4 residues within 4Å: Chain A: U.3019, C.3021, A.3069, A.3139 No protein-ligand interaction detected (PLIP) MG.63: 3 residues within 4Å: Chain A: A.1806, U.3175, A.3216 No protein-ligand interaction detected (PLIP) MG.64: 4 residues within 4Å: Chain A: A.885, C.886, A.3199, G.3201 No protein-ligand interaction detected (PLIP) MG.65: 1 residues within 4Å: Chain A: C.1237 No protein-ligand interaction detected (PLIP) MG.66: 2 residues within 4Å: Chain A: C.3522, U.3523 No protein-ligand interaction detected (PLIP) MG.67: 2 residues within 4Å: Chain A: C.41, G.3238 No protein-ligand interaction detected (PLIP) MG.68: 1 residues within 4Å: Chain A: A.3239 No protein-ligand interaction detected (PLIP) MG.69: 1 residues within 4Å: Chain A: G.3512 No protein-ligand interaction detected (PLIP) MG.70: 3 residues within 4Å: Chain A: U.3242, G.3513 Chain E: P.206 No protein-ligand interaction detected (PLIP) MG.71: 2 residues within 4Å: Chain A: A.3245, C.3246 No protein-ligand interaction detected (PLIP) MG.72: 3 residues within 4Å: Chain A: U.35, G.3516, U.3517 No protein-ligand interaction detected (PLIP) MG.73: 2 residues within 4Å: Chain A: U.1278, A.3542 No protein-ligand interaction detected (PLIP) MG.74: 2 residues within 4Å: Chain A: A.3543, C.3544 No protein-ligand interaction detected (PLIP) MG.75: 5 residues within 4Å: Chain A: G.3564, G.3565, G.3612, G.3660, C.3661 No protein-ligand interaction detected (PLIP) MG.76: 1 residues within 4Å: Chain A: A.3568 No protein-ligand interaction detected (PLIP) MG.77: 1 residues within 4Å: Chain A: A.3610 No protein-ligand interaction detected (PLIP) MG.78: 2 residues within 4Å: Chain A: G.3645, G.3658 No protein-ligand interaction detected (PLIP) MG.79: 2 residues within 4Å: Chain A: A.3714, A.3862 No protein-ligand interaction detected (PLIP) MG.80: 3 residues within 4Å: Chain A: G.1192, G.1200, G.3863 No protein-ligand interaction detected (PLIP) MG.81: 4 residues within 4Å: Chain A: A.1191, G.1192, A.3864 Chain E: A.203 No protein-ligand interaction detected (PLIP) MG.82: 2 residues within 4Å: Chain A: A.3862, G.3863 No protein-ligand interaction detected (PLIP) MG.83: 2 residues within 4Å: Chain A: G.3721, G.3777 No protein-ligand interaction detected (PLIP) MG.84: 6 residues within 4Å: Chain A: G.3722, A.3723, U.3724, C.3772, C.3773, U.3774 No protein-ligand interaction detected (PLIP) MG.85: 4 residues within 4Å: Chain A: G.882, A.3198, A.3723, U.3774 No protein-ligand interaction detected (PLIP) MG.86: 1 residues within 4Å: Chain A: G.3729 No protein-ligand interaction detected (PLIP) MG.87: 3 residues within 4Å: Chain A: C.3746, U.3749, C.3750 No protein-ligand interaction detected (PLIP) MG.88: 2 residues within 4Å: Chain A: A.1414, C.3773 No protein-ligand interaction detected (PLIP) MG.89: 3 residues within 4Å: Chain A: A.3224, U.3779, G.3780 No protein-ligand interaction detected (PLIP) MG.90: 2 residues within 4Å: Chain A: A.3225, G.3780 No protein-ligand interaction detected (PLIP) MG.91: 2 residues within 4Å: Chain A: G.3807, A.3808 No protein-ligand interaction detected (PLIP) MG.92: 3 residues within 4Å: Chain A: G.2294, U.2295, A.3825 No protein-ligand interaction detected (PLIP) MG.93: 4 residues within 4Å: Chain A: A.2293, G.2294, U.2295, A.3825 No protein-ligand interaction detected (PLIP) MG.94: 3 residues within 4Å: Chain A: C.3155, A.3825, U.3826 No protein-ligand interaction detected (PLIP) MG.95: 2 residues within 4Å: Chain A: G.3780, G.3851 No protein-ligand interaction detected (PLIP) MG.96: 3 residues within 4Å: Chain A: C.3848, G.3849, U.3850 No protein-ligand interaction detected (PLIP) MG.97: 3 residues within 4Å: Chain A: A.3793, C.3815, A.3816 No protein-ligand interaction detected (PLIP) MG.98: 5 residues within 4Å: Chain A: G.3220, G.3221, U.3850, G.3851, A.3852 No protein-ligand interaction detected (PLIP) MG.99: 3 residues within 4Å: Chain A: G.1151, U.3855 Chain F: K.243 No protein-ligand interaction detected (PLIP) MG.100: 3 residues within 4Å: Chain A: G.3856, G.3857, G.3858 No protein-ligand interaction detected (PLIP) MG.101: 2 residues within 4Å: Chain A: G.3137, G.3867 No protein-ligand interaction detected (PLIP) MG.102: 3 residues within 4Å: Chain A: U.1150, G.1151, C.1153 No protein-ligand interaction detected (PLIP) MG.103: 1 residues within 4Å: Chain A: G.1154 No protein-ligand interaction detected (PLIP) MG.104: 2 residues within 4Å: Chain A: U.4011, A.4036 No protein-ligand interaction detected (PLIP) MG.105: 1 residues within 4Å: Chain A: A.4034 No protein-ligand interaction detected (PLIP) MG.106: 2 residues within 4Å: Chain A: U.4014, C.4027 No protein-ligand interaction detected (PLIP) MG.107: 2 residues within 4Å: Chain A: G.3979, A.3980 No protein-ligand interaction detected (PLIP) MG.108: 3 residues within 4Å: Chain A: U.4074, U.4075, U.4258 No protein-ligand interaction detected (PLIP) MG.109: 2 residues within 4Å: Chain A: G.1438, A.1439 No protein-ligand interaction detected (PLIP) MG.110: 1 residues within 4Å: Chain A: U.1215 No protein-ligand interaction detected (PLIP) MG.111: 2 residues within 4Å: Chain A: G.1239, G.1396 No protein-ligand interaction detected (PLIP) MG.112: 1 residues within 4Å: Chain A: U.1218 No protein-ligand interaction detected (PLIP) MG.113: 2 residues within 4Å: Chain A: C.316, G.3684 No protein-ligand interaction detected (PLIP) MG.114: 3 residues within 4Å: Chain A: G.409, U.410, G.411 No protein-ligand interaction detected (PLIP) MG.115: 2 residues within 4Å: Chain A: G.896, C.1789 No protein-ligand interaction detected (PLIP) MG.116: 3 residues within 4Å: Chain A: G.890, C.3186, A.3187 No protein-ligand interaction detected (PLIP) MG.117: 1 residues within 4Å: Chain A: G.3202 No protein-ligand interaction detected (PLIP) MG.118: 3 residues within 4Å: Chain A: G.3219, G.3221, A.3888 No protein-ligand interaction detected (PLIP) MG.119: 2 residues within 4Å: Chain A: A.1806, G.1807 No protein-ligand interaction detected (PLIP) MG.120: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.121: 3 residues within 4Å: Chain A: U.1392 Chain O: S.4, N.6 No protein-ligand interaction detected (PLIP) MG.122: 4 residues within 4Å: Chain A: G.3099, G.3137, A.3138, U.3140 No protein-ligand interaction detected (PLIP) MG.123: 3 residues within 4Å: Chain A: A.3228, G.3229, G.3777 No protein-ligand interaction detected (PLIP) MG.124: 2 residues within 4Å: Chain A: G.1843, A.2230 No protein-ligand interaction detected (PLIP) MG.125: 3 residues within 4Å: Chain A: U.1814, U.2269, G.2273 No protein-ligand interaction detected (PLIP) MG.126: 1 residues within 4Å: Chain A: A.1775 No protein-ligand interaction detected (PLIP) MG.127: 4 residues within 4Å: Chain A: G.1085, G.1184, A.3239, G.3240 No protein-ligand interaction detected (PLIP) MG.128: 4 residues within 4Å: Chain A: G.1213, A.1238, G.1239, U.3236 No protein-ligand interaction detected (PLIP) MG.129: 2 residues within 4Å: Chain A: G.1397, G.1398 No protein-ligand interaction detected (PLIP) MG.130: 2 residues within 4Å: Chain A: A.1280, A.1281 No protein-ligand interaction detected (PLIP) MG.131: 3 residues within 4Å: Chain A: G.3734, U.3735, G.3737 No protein-ligand interaction detected (PLIP) MG.132: 1 residues within 4Å: Chain A: U.3917 No protein-ligand interaction detected (PLIP) MG.133: 1 residues within 4Å: Chain A: G.1240 No protein-ligand interaction detected (PLIP) MG.134: 4 residues within 4Å: Chain A: U.900, G.1075, A.1077, C.1078 No protein-ligand interaction detected (PLIP) MG.135: 1 residues within 4Å: Chain A: U.909 No protein-ligand interaction detected (PLIP) MG.136: 2 residues within 4Å: Chain A: A.1077, C.1080 No protein-ligand interaction detected (PLIP) MG.137: 3 residues within 4Å: Chain A: G.1081, A.1082, G.1210 No protein-ligand interaction detected (PLIP) MG.138: 3 residues within 4Å: Chain 7: D.42 Chain A: U.878, A.883 1 PLIP interactions: 1 interactions with chain 7 Metal complexes: 7:D.42 MG.139: 3 residues within 4Å: Chain A: U.1147, U.2967, A.2968 No protein-ligand interaction detected (PLIP) MG.140: 3 residues within 4Å: Chain A: U.3713, A.3714, A.3875 No protein-ligand interaction detected (PLIP) MG.141: 2 residues within 4Å: Chain A: A.3230, A.3719 No protein-ligand interaction detected (PLIP) MG.142: 2 residues within 4Å: Chain A: A.1226, G.1723 No protein-ligand interaction detected (PLIP) MG.143: 2 residues within 4Å: Chain A: G.897, G.1791 No protein-ligand interaction detected (PLIP) MG.144: 2 residues within 4Å: Chain A: U.1448, U.1449 No protein-ligand interaction detected (PLIP) MG.145: 3 residues within 4Å: Chain A: C.1441, G.1442, G.1721 No protein-ligand interaction detected (PLIP) MG.146: 3 residues within 4Å: Chain 0: R.56 Chain A: C.14, A.15 No protein-ligand interaction detected (PLIP) MG.147: 3 residues within 4Å: Chain A: U.878, C.879, G.1216 No protein-ligand interaction detected (PLIP) MG.148: 2 residues within 4Å: Chain A: A.1803, C.3890 No protein-ligand interaction detected (PLIP) MG.149: 2 residues within 4Å: Chain A: C.1422, A.1439 No protein-ligand interaction detected (PLIP) MG.150: 1 residues within 4Å: Chain A: C.1424 No protein-ligand interaction detected (PLIP) MG.151: 1 residues within 4Å: Chain A: C.927 No protein-ligand interaction detected (PLIP) MG.152: 2 residues within 4Å: Chain A: A.237, G.238 No protein-ligand interaction detected (PLIP) MG.153: 2 residues within 4Å: Chain A: G.235, U.236 No protein-ligand interaction detected (PLIP) MG.154: 2 residues within 4Å: Chain A: C.214, G.231 No protein-ligand interaction detected (PLIP) MG.155: 1 residues within 4Å: Chain A: G.207 No protein-ligand interaction detected (PLIP) MG.156: 1 residues within 4Å: Chain A: G.1133 No protein-ligand interaction detected (PLIP) MG.157: 2 residues within 4Å: Chain A: U.1097, A.1190 No protein-ligand interaction detected (PLIP) MG.158: 2 residues within 4Å: Chain A: U.1097, G.1098 No protein-ligand interaction detected (PLIP) MG.159: 3 residues within 4Å: Chain A: A.1092, A.1093, U.1179 No protein-ligand interaction detected (PLIP) MG.160: 1 residues within 4Å: Chain A: G.2197 No protein-ligand interaction detected (PLIP) MG.161: 3 residues within 4Å: Chain A: U.31, G.32, G.48 No protein-ligand interaction detected (PLIP) MG.162: 2 residues within 4Å: Chain A: G.48, C.283 No protein-ligand interaction detected (PLIP) MG.163: 2 residues within 4Å: Chain A: A.65, U.321 No protein-ligand interaction detected (PLIP) MG.164: 2 residues within 4Å: Chain A: G.325 Ligands: MG.28 No protein-ligand interaction detected (PLIP) MG.165: 1 residues within 4Å: Chain A: A.101 No protein-ligand interaction detected (PLIP) MG.166: 3 residues within 4Å: Chain A: C.92, G.93, U.3669 No protein-ligand interaction detected (PLIP) MG.167: 1 residues within 4Å: Chain A: C.1400 No protein-ligand interaction detected (PLIP) MG.168: 4 residues within 4Å: Chain A: A.887, C.888, A.3223, U.3779 No protein-ligand interaction detected (PLIP) MG.169: 5 residues within 4Å: Chain 3: H.39 Chain A: C.1234, C.1235, G.3706, A.3707 No protein-ligand interaction detected (PLIP) MG.170: 5 residues within 4Å: Chain A: G.1430, A.1431, U.1432, G.1433, C.1481 No protein-ligand interaction detected (PLIP) MG.171: 1 residues within 4Å: Chain A: C.1458 No protein-ligand interaction detected (PLIP) MG.172: 1 residues within 4Å: Chain A: G.872 No protein-ligand interaction detected (PLIP) MG.173: 2 residues within 4Å: Chain A: G.3203, C.3204 No protein-ligand interaction detected (PLIP) MG.174: 1 residues within 4Å: Chain A: C.1617 No protein-ligand interaction detected (PLIP) MG.175: 1 residues within 4Å: Chain A: G.1447 No protein-ligand interaction detected (PLIP) MG.176: 1 residues within 4Å: Chain A: G.1185 No protein-ligand interaction detected (PLIP) MG.177: 2 residues within 4Å: Chain A: U.2082, G.2083 No protein-ligand interaction detected (PLIP) MG.178: 5 residues within 4Å: Chain A: A.2139, G.2141, C.2142, G.2160, U.2161 No protein-ligand interaction detected (PLIP) MG.179: 1 residues within 4Å: Chain A: U.1962 No protein-ligand interaction detected (PLIP) MG.180: 6 residues within 4Å: Chain A: G.1886, C.1888, A.1954, G.1957, G.1958, G.1959 No protein-ligand interaction detected (PLIP) MG.181: 3 residues within 4Å: Chain A: G.1953, A.1954 Chain C: U.110 No protein-ligand interaction detected (PLIP) MG.182: 3 residues within 4Å: Chain A: A.1896, C.1908, G.1909 No protein-ligand interaction detected (PLIP) MG.183: 4 residues within 4Å: Chain A: G.3511, G.3512, G.3513, G.3514 No protein-ligand interaction detected (PLIP) MG.184: 2 residues within 4Å: Chain A: A.2288, G.2289 No protein-ligand interaction detected (PLIP) MG.185: 2 residues within 4Å: Chain A: G.3962, G.3992 No protein-ligand interaction detected (PLIP) MG.186: 3 residues within 4Å: Chain A: A.3178, G.3179, C.3180 No protein-ligand interaction detected (PLIP) MG.187: 2 residues within 4Å: Chain A: C.1139, C.1169 No protein-ligand interaction detected (PLIP) MG.188: 5 residues within 4Å: Chain A: U.1137, C.1138, C.1169, C.1170, G.1171 No protein-ligand interaction detected (PLIP) MG.189: 2 residues within 4Å: Chain A: U.3961, G.3962 No protein-ligand interaction detected (PLIP) MG.190: 4 residues within 4Å: Chain A: G.3960, U.3961, G.3995, C.3996 No protein-ligand interaction detected (PLIP) MG.191: 1 residues within 4Å: Chain A: G.3959 No protein-ligand interaction detected (PLIP) MG.192: 2 residues within 4Å: Chain A: C.3932, G.3933 No protein-ligand interaction detected (PLIP) MG.193: 3 residues within 4Å: Chain A: U.1755, A.1756 Chain C: A.9 No protein-ligand interaction detected (PLIP) MG.194: 2 residues within 4Å: Chain A: G.54 Chain c: R.43 No protein-ligand interaction detected (PLIP) MG.195: 1 residues within 4Å: Chain B: U.120 No protein-ligand interaction detected (PLIP) MG.196: 1 residues within 4Å: Chain B: U.114 No protein-ligand interaction detected (PLIP) MG.197: 1 residues within 4Å: Chain B: A.42 No protein-ligand interaction detected (PLIP) MG.198: 2 residues within 4Å: Chain B: A.54, A.55 No protein-ligand interaction detected (PLIP) MG.199: 3 residues within 4Å: Chain B: U.53, A.55, G.56 No protein-ligand interaction detected (PLIP) MG.200: 2 residues within 4Å: Chain B: G.64, G.65 No protein-ligand interaction detected (PLIP) MG.201: 2 residues within 4Å: Chain A: G.1438 Chain B: A.83 No protein-ligand interaction detected (PLIP) MG.202: 2 residues within 4Å: Chain C: U.18, C.19 No protein-ligand interaction detected (PLIP) MG.203: 1 residues within 4Å: Chain C: C.35 No protein-ligand interaction detected (PLIP) MG.204: 1 residues within 4Å: Chain C: A.65 No protein-ligand interaction detected (PLIP) MG.205: 2 residues within 4Å: Chain C: U.51, A.52 No protein-ligand interaction detected (PLIP) MG.206: 3 residues within 4Å: Chain C: U.67, G.68, U.69 No protein-ligand interaction detected (PLIP) MG.207: 3 residues within 4Å: Chain A: U.1736 Chain C: C.19, A.20 No protein-ligand interaction detected (PLIP) MG.208: 1 residues within 4Å: Chain F: S.7 No protein-ligand interaction detected (PLIP) MG.209: 2 residues within 4Å: Chain A: G.1407 Chain M: N.14 No protein-ligand interaction detected (PLIP) MG.210: 2 residues within 4Å: Chain A: C.1157 Chain S: Y.130 1 PLIP interactions: 1 interactions with chain S Metal complexes: S:Y.130 MG.211: 4 residues within 4Å: Chain A: A.3213, U.3214 Chain S: R.62, N.64 1 PLIP interactions: 1 interactions with chain S Metal complexes: S:R.62 MG.212: 2 residues within 4Å: Chain A: U.2295 Chain Y: N.50 No protein-ligand interaction detected (PLIP) MG.213: 2 residues within 4Å: Chain 3: H.25 Chain A: C.1078 1 PLIP interactions: 1 interactions with chain 3 Metal complexes: 3:H.25 MG.215: 4 residues within 4Å: Chain 9: G.55, T.70, H.73 Chain A: G.2027 3 PLIP interactions: 3 interactions with chain 9 Metal complexes: 9:G.55, 9:T.70, 9:H.73

5 x ZN: ZINC ION(Non-covalent)

ZN.214: 5 residues within 4Å: Chain 9: S.44, C.46, C.49, C.83, C.86 4 PLIP interactions: 4 interactions with chain 9 Metal complexes: 9:C.46, 9:C.49, 9:C.83, 9:C.86 ZN.216: 4 residues within 4Å: Chain c: C.19, C.22, C.34, C.37 4 PLIP interactions: 4 interactions with chain c Metal complexes: c:C.19, c:C.22, c:C.34, c:C.37 ZN.217: 4 residues within 4Å: Chain f: C.70, C.73, C.84, C.89 4 PLIP interactions: 4 interactions with chain f Metal complexes: f:C.70, f:C.73, f:C.84, f:C.89 ZN.218: 4 residues within 4Å: Chain h: C.12, C.15, C.72, C.77 4 PLIP interactions: 4 interactions with chain h Metal complexes: h:C.12, h:C.15, h:C.72, h:C.77 ZN.219: 4 residues within 4Å: Chain i: C.39, C.42, C.57, C.60 3 PLIP interactions: 3 interactions with chain i Metal complexes: i:C.39, i:C.42, i:C.57

Links

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Citation

Hopfler, M. et al., Mechanism of ribosome-associated mRNA degradation during tubulin autoregulation. Mol.Cell (2023)

Release Date

2023-07-05

Peptides

Nascent polypeptide-associated complex subunit alpha N-terminal region: D
60S ribosomal protein L8: E
Ribosomal protein L3: F
60S ribosomal protein L4: G
Ribosomal_L18_c domain-containing protein: H
60S ribosomal protein L6: I
60S ribosomal protein L7: J
60S ribosomal protein L7a: K
60S ribosomal protein L9: L
Ribosomal protein L10: M
60S ribosomal protein L11: N
60S ribosomal protein L13: O
60S ribosomal protein L14: P
Ribosomal protein L15: Q
60S ribosomal protein L13a: R
60S ribosomal protein L17: S
Ribosomal protein L18: T
60S ribosomal protein L19: U
60S ribosomal protein L18a: V
60S ribosomal protein L21: W
60S ribosomal protein L22: X
60S ribosomal protein L23: Y
Ribosomal protein L24: Z
Ribosomal_L23eN domain-containing protein: 0
Ribosomal protein L26: 1
60S ribosomal protein L27: 2
60S ribosomal protein L27a: 3
60S ribosomal protein L29: 4
60S ribosomal protein L30: 5
60S ribosomal protein L31: 6
Ribosomal protein L32: 7
60S ribosomal protein L35a: 8
60S ribosomal protein L34: 9
60S ribosomal protein L35: a
60S ribosomal protein L36: b
Ribosomal protein L37: c
60S ribosomal protein L38: d
60S ribosomal protein L39-like: e
Ubiquitin-60S ribosomal protein L40: f
60S ribosomal protein L41: g
60S ribosomal protein L36a-like: h
60S ribosomal protein L37a: i
60S ribosomal protein L28: j
60S acidic ribosomal protein P0: k
60S ribosomal protein L12: l
S phase cyclin A-associated protein in the endoplasmic reticulum: m
Tetratricopeptide repeat protein 5: n
Tubulin beta chain: o

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

D
D1

E
A2

F
B2

G
C2

H
D2

I
E2

J
F2

K
G2

L
H2

M
I2

N
J2

O
K2

P
L2

Q
M2

R
N2

S
O2

T
P2

U
Q2

V
R2

W
S2

X
T2

Y
U2

Z
V2

0
W2

1
X2

2
Y2

3
Z2

4
a2

5
b2

6
c2

7
d2

8
e2

9
f2

a
g2

b
h2

c
i2

d
j2

e
k2

f
l2

g
m2

h
n2

i
o2

j
p2

k
q2

l
r2

m
s2

n
t2

o
u2

Nascent polypeptide-associated complex subunit alpha N-terminal region

60S ribosomal protein L8

Ribosomal protein L3

60S ribosomal protein L4

Ribosomal_L18_c domain-containing protein

60S ribosomal protein L6

60S ribosomal protein L7

60S ribosomal protein L7a

60S ribosomal protein L9

Ribosomal protein L10

60S ribosomal protein L11

60S ribosomal protein L13

60S ribosomal protein L14

Ribosomal protein L15

60S ribosomal protein L13a

60S ribosomal protein L17

Ribosomal protein L18

60S ribosomal protein L19

60S ribosomal protein L18a

60S ribosomal protein L21

60S ribosomal protein L22

60S ribosomal protein L23

Ribosomal protein L24

Ribosomal_L23eN domain-containing protein

Ribosomal protein L26

60S ribosomal protein L27

60S ribosomal protein L27a

60S ribosomal protein L29

60S ribosomal protein L30

60S ribosomal protein L31

Ribosomal protein L32

60S ribosomal protein L35a

60S ribosomal protein L34

60S ribosomal protein L35

60S ribosomal protein L36

Ribosomal protein L37

60S ribosomal protein L38

60S ribosomal protein L39-like

Ubiquitin-60S ribosomal protein L40

60S ribosomal protein L41

60S ribosomal protein L36a-like

60S ribosomal protein L37a

60S ribosomal protein L28

60S acidic ribosomal protein P0

60S ribosomal protein L12

S phase cyclin A-associated protein in the endoplasmic reticulum

Tetratricopeptide repeat protein 5

Tubulin beta chain

Related Entries With Identical Sequence