SMTL ID : 8ca5.1

Cryo-EM structure NDUFS4 knockout complex I from Mus musculus heart (Class 3).

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
2 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
7 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)
2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
1 x UQ9: Ubiquinone-9(Non-covalent)
6 x CDL: CARDIOLIPIN(Non-covalent)
2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
2 x EHZ: ~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate(Covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Yin, Z. et al., Structural insights into respiratory complex I deficiency and assembly from the mitochondrial disease-related ndufs4 -/- mouse. Embo J. (2024)
Release Date
2023-12-20
Peptides
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 2: A
NADH-ubiquinone oxidoreductase chain 3: B
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial: C
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial: D
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial: E
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial: F
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial: G
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial: H
NADH-ubiquinone oxidoreductase chain 1: I
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial: J
NADH-ubiquinone oxidoreductase chain 6: K
NADH-ubiquinone oxidoreductase chain 4L: L
NADH-ubiquinone oxidoreductase chain 5: M
NADH-ubiquinone oxidoreductase chain 4: N
NADH-ubiquinone oxidoreductase chain 2: O
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial: P
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial: Q
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2: R
Acyl carrier protein, mitochondrial: ST
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5: U
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6: V
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8: W
MCG5603: X
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13: Y
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1: Z
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3: 0
NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial: 1
NADH dehydrogenase [ubiquinone] 1 subunit C2: 2
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5: 3
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1: 4
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial: 5
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial: 6
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6: 7
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial: 8
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3: 9
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial: a
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4: b
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9: c
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7: d
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10: e
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7: f
NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial: g
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
t
B
A
C
B
D
C
E
D
F
E
G
F
H
G
I
H
J
I
K
J
L
K
M
L
N
M
O
N
P
O
Q
P
R
S
S
T
T
U
U
V
V
W
W
X
X
Y
Y
Z
Z
a
0
b
1
c
2
d
3
e
4
f
5
g
6
h
7
i
8
j
9
k
a
l
b
m
c
n
d
o
e
p
f
r
g
s
Membrane
We predict this structure to be a membrane protein.

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 2

NADH-ubiquinone oxidoreductase chain 3

NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial

NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial

NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial

NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial

NADH-ubiquinone oxidoreductase chain 1

NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial

NADH-ubiquinone oxidoreductase chain 6

NADH-ubiquinone oxidoreductase chain 4L

NADH-ubiquinone oxidoreductase chain 5

NADH-ubiquinone oxidoreductase chain 4

NADH-ubiquinone oxidoreductase chain 2

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2

Acyl carrier protein, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8

MCG5603

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3

NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial

NADH dehydrogenase [ubiquinone] 1 subunit C2

NADH dehydrogenase [ubiquinone] iron-sulfur protein 5

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7

NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial

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6g2j.1 | 6g72.1 | 6zr2.1 | 6ztq.1 | 7ak5.1 | 7ak6.1 | 7b93.1 | 7psa.1 | 8c2s.1 | 8ca3.1 | 8ca4.1 | 8iap.1 | 8iaq.1 | 8ib5.1 | 8ib6.1 | 8iba.1 | 8ibb.1 | 8ibe.1 | 8ibf.1 | 8ic3.1 | 8ic4.1 | 8olt.1 | 8om1.1 | 8pw5.37 | 8pw5.38 | 8pw5.39 | 8pw5.40 | 8pw5.41 | 8pw5.42 | 8pw5.43  more...