SMTL ID : 8ef5.1

Fentanyl-bound mu-opioid receptor-Gi complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-1-1-1-mer

Ligands

2 x 7V7: N-phenyl-N-[1-(2-phenylethyl)piperidin-4-yl]propanamide(Non-covalent)

7V7.1: 13 residues within 4Å: Chain A: Q.125, N.128, W.134, D.148, Y.149, M.152, C.218, W.294, I.297, V.301, I.323, G.326, Y.327 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Q.125, A:W.134, A:W.294, A:W.294, A:I.297, A:V.301, A:I.323 Hydrogen bonds: A:Q.125 Salt bridges: A:D.148 pi-Stacking: A:Y.327 7V7.7: 10 residues within 4Å: Chain F: Q.125, W.134, V.144, I.145, D.148, Y.149, M.152, C.218, G.326, Y.327 6 PLIP interactions: 6 interactions with chain F Hydrophobic interactions: F:W.134, F:V.144, F:I.145 Hydrogen bonds: F:Q.125 Salt bridges: F:D.148 pi-Stacking: F:Y.327

10 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 7 residues within 4Å: Chain A: M.100, N.110, L.113, L.117, Y.150, K.186, W.193 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.113, A:L.117 CLR.3: 5 residues within 4Å: Chain A: T.295, P.296, Y.300, I.303, S.318 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:T.295, A:P.296, A:P.296, A:Y.300, A:Y.300, A:I.303 CLR.4: 12 residues within 4Å: Chain A: L.195, A.198, I.199, P.202, M.206, W.229, L.233, C.236, F.240 Chain F: L.195, F.240 Ligands: CLR.11 10 PLIP interactions: 8 interactions with chain A, 2 interactions with chain F Hydrophobic interactions: A:L.195, A:A.198, A:I.199, A:I.199, A:P.202, A:W.229, A:L.233, A:F.240, F:L.195, F:F.240 CLR.5: 7 residues within 4Å: Chain A: W.227, Y.228, N.231 Chain F: V.164, H.172, K.175 Ligands: CLR.8 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain F Hydrophobic interactions: A:W.227, A:Y.228, A:N.231, F:V.164 CLR.6: 7 residues within 4Å: Chain A: Y.167, L.247, V.251 Chain F: I.235, I.239, L.306 Ligands: CLR.12 6 PLIP interactions: 3 interactions with chain F, 3 interactions with chain A Hydrophobic interactions: F:I.235, F:I.239, F:I.239, A:L.247, A:V.251, A:V.251 CLR.8: 9 residues within 4Å: Chain A: I.235, I.239, L.306 Chain F: Y.167, M.244, L.247, V.251, L.255 Ligands: CLR.5 6 PLIP interactions: 4 interactions with chain F, 2 interactions with chain A Hydrophobic interactions: F:L.247, F:V.251, F:V.251, F:L.255, A:I.235, A:I.239 CLR.9: 8 residues within 4Å: Chain F: M.100, I.106, F.109, N.110, L.113, L.117, K.186, W.193 8 PLIP interactions: 8 interactions with chain F Hydrophobic interactions: F:I.106, F:F.109, F:L.113, F:L.117, F:K.186, F:W.193, F:W.193 Hydrogen bonds: F:K.186 CLR.10: 4 residues within 4Å: Chain F: P.296, Y.300, I.303, S.318 4 PLIP interactions: 4 interactions with chain F Hydrophobic interactions: F:P.296, F:Y.300, F:Y.300, F:I.303 CLR.11: 10 residues within 4Å: Chain F: F.157, L.195, A.198, I.199, M.206, W.229, L.233, C.236, F.240 Ligands: CLR.4 7 PLIP interactions: 7 interactions with chain F Hydrophobic interactions: F:F.157, F:L.195, F:I.199, F:I.199, F:W.229, F:L.233, F:F.240 CLR.12: 9 residues within 4Å: Chain A: V.164, H.172, K.175, I.248 Chain F: W.227, Y.228, N.231, I.235 Ligands: CLR.6 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain F Hydrophobic interactions: A:V.164, A:I.248, F:W.227, F:Y.228, F:N.231, F:I.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhuang, Y. et al., Molecular recognition of morphine and fentanyl by the human mu-opioid receptor. Cell (2022)

Release Date

2022-11-09

Peptides

Mu-type opioid receptor: AF
Guanine nucleotide-binding protein G(i) subunit alpha-1: BG
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: D
scFv16: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

F
M

B
A

G
F

C
B

D
C

E
E

Membrane

We predict this structure to be a membrane protein.
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Mu-type opioid receptor

Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

scFv16

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