SMTL ID : 8f7q.1

Gi bound mu-opioid receptor in complex with beta-endorphin

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-1-1-1-mer

Ligands

10 x CLR: CHOLESTEROL(Non-covalent)

CLR.1: 8 residues within 4Å: Chain A: M.108, F.117, N.118, L.121, Y.158, K.194, V.198, W.201 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.117, A:F.117, A:L.121, A:K.194, A:V.198 CLR.2: 5 residues within 4Å: Chain A: P.304, I.307, Y.308, I.311, S.326 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:P.304, A:P.304, A:I.307, A:Y.308, A:I.311 CLR.3: 8 residues within 4Å: Chain A: W.165, L.203, I.207, M.214, W.237, L.240, L.241, F.248 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.203, A:I.207, A:I.207, A:W.237, A:L.240, A:L.241, A:F.248, A:F.248, A:F.248 CLR.4: 14 residues within 4Å: Chain A: W.235, Y.236, N.239, L.240, I.243 Chain G: W.165, V.172, Y.175, I.176, H.180, K.183, M.252, I.256 Ligands: CLR.6 10 PLIP interactions: 4 interactions with chain A, 6 interactions with chain G Hydrophobic interactions: A:W.235, A:Y.236, A:Y.236, A:I.243, G:W.165, G:V.172, G:Y.175, G:I.176, G:K.183, G:I.256 CLR.5: 8 residues within 4Å: Chain A: Y.175, L.255, I.256, V.259, L.263 Chain G: I.247, L.314 Ligands: CLR.10 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain G Hydrophobic interactions: A:L.255, A:I.256, A:V.259, G:I.247, G:L.314 CLR.6: 9 residues within 4Å: Chain A: I.243, I.247 Chain G: Y.175, M.252, L.255, I.256, V.259, L.263 Ligands: CLR.4 10 PLIP interactions: 6 interactions with chain G, 4 interactions with chain A Hydrophobic interactions: G:Y.175, G:L.255, G:L.255, G:I.256, G:V.259, G:L.263, A:I.243, A:I.243, A:I.247, A:I.247 CLR.7: 6 residues within 4Å: Chain G: M.108, F.117, N.118, Y.158, K.194, W.201 3 PLIP interactions: 3 interactions with chain G Hydrophobic interactions: G:F.117, G:K.194, G:W.201 CLR.8: 5 residues within 4Å: Chain G: V.300, T.303, P.304, Y.308, S.326 6 PLIP interactions: 6 interactions with chain G Hydrophobic interactions: G:V.300, G:T.303, G:P.304, G:P.304, G:Y.308, G:Y.308 CLR.9: 9 residues within 4Å: Chain A: L.203 Chain G: I.207, P.210, M.214, W.237, L.240, L.241, C.244, F.248 8 PLIP interactions: 1 interactions with chain A, 7 interactions with chain G Hydrophobic interactions: A:L.203, G:P.210, G:W.237, G:W.237, G:L.240, G:L.241, G:F.248, G:F.248 CLR.10: 12 residues within 4Å: Chain A: V.172, Y.175, H.180, K.183, I.256 Chain G: W.235, Y.236, N.239, L.240, I.243, C.244 Ligands: CLR.5 10 PLIP interactions: 6 interactions with chain G, 4 interactions with chain A Hydrophobic interactions: G:W.235, G:W.235, G:Y.236, G:N.239, G:L.240, G:I.243, A:V.172, A:V.172, A:Y.175, A:I.256

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., Structures of the entire human opioid receptor family. Cell (2023)

Release Date

2022-12-14

Peptides

Mu-type opioid receptor: AG
Beta-endorphin: BH
Guanine nucleotide-binding protein G(i) subunit alpha-1: CI
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: D
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: E
scFv16: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

G
M

B
P

H
Q

C
A

I
F

D
B

E
C

F
E

Membrane

We predict this structure to be a membrane protein.
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Mu-type opioid receptor

Beta-endorphin

Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

scFv16

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