SMTL ID : 8ef6.1

Morphine-bound mu-opioid receptor-Gi complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-1-1-1-mer

Ligands

2 x MOI: (7R,7AS,12BS)-3-METHYL-2,3,4,4A,7,7A-HEXAHYDRO-1H-4,12-METHANO[1]BENZOFURO[3,2-E]ISOQUINOLINE-7,9-DIOL(Non-covalent)

MOI.1: 6 residues within 4Å: Chain A: D.148, Y.149, M.152, V.237, I.297, W.319 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.149, A:V.237, A:I.297, A:W.319 Salt bridges: A:D.148 MOI.7: 6 residues within 4Å: Chain F: D.148, Y.149, M.152, V.237, I.297, W.319 5 PLIP interactions: 5 interactions with chain F Hydrophobic interactions: F:Y.149, F:V.237, F:I.297, F:W.319 Salt bridges: F:D.148

10 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 9 residues within 4Å: Chain A: M.100, I.106, F.109, N.110, L.113, Y.150, K.186, V.190, W.193 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.106, A:F.109, A:F.109, A:L.113, A:K.186, A:K.186, A:V.190, A:W.193, A:W.193 Hydrogen bonds: A:K.186 CLR.3: 5 residues within 4Å: Chain A: P.296, Y.300, I.303, I.309, S.318 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.296, A:Y.300, A:Y.300, A:I.303, A:I.303, A:I.309 CLR.4: 9 residues within 4Å: Chain A: F.157, L.195, A.198, I.199, P.202, W.229, F.240 Chain F: L.195 Ligands: CLR.11 7 PLIP interactions: 1 interactions with chain F, 6 interactions with chain A Hydrophobic interactions: F:L.195, A:F.157, A:L.195, A:I.199, A:P.202, A:W.229, A:F.240 CLR.5: 13 residues within 4Å: Chain A: W.227, Y.228, N.231, L.232, I.235, A.305 Chain F: V.164, Y.167, I.168, H.172, K.175, I.248 Ligands: CLR.8 10 PLIP interactions: 5 interactions with chain F, 5 interactions with chain A Hydrophobic interactions: F:V.164, F:Y.167, F:I.168, F:K.175, F:I.248, A:W.227, A:W.227, A:Y.228, A:L.232, A:I.235 CLR.6: 8 residues within 4Å: Chain A: Y.167, L.247, V.251, L.255 Chain F: I.235, I.239, L.306 Ligands: CLR.12 6 PLIP interactions: 3 interactions with chain F, 3 interactions with chain A Hydrophobic interactions: F:I.235, F:I.239, F:I.239, A:L.247, A:V.251, A:V.251 CLR.8: 8 residues within 4Å: Chain A: I.235, I.239, L.306 Chain F: Y.167, L.247, V.251, L.255 Ligands: CLR.5 8 PLIP interactions: 4 interactions with chain F, 4 interactions with chain A Hydrophobic interactions: F:L.247, F:L.247, F:V.251, F:L.255, A:I.235, A:I.239, A:I.239, A:L.306 CLR.9: 9 residues within 4Å: Chain F: M.100, I.106, F.109, N.110, L.113, L.117, Y.150, K.186, W.193 7 PLIP interactions: 7 interactions with chain F Hydrophobic interactions: F:I.106, F:F.109, F:L.113, F:L.117, F:W.193, F:W.193 Hydrogen bonds: F:K.186 CLR.10: 3 residues within 4Å: Chain F: I.303, F.314, S.318 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:I.303, F:F.314 CLR.11: 13 residues within 4Å: Chain A: F.240 Chain F: F.157, L.195, A.198, I.199, P.202, M.206, W.229, L.232, L.233, C.236, F.240 Ligands: CLR.4 7 PLIP interactions: 6 interactions with chain F, 1 interactions with chain A Hydrophobic interactions: F:F.157, F:A.198, F:I.199, F:P.202, F:W.229, F:L.233, A:F.240 CLR.12: 13 residues within 4Å: Chain A: V.164, Y.167, H.172, K.175, I.248 Chain F: W.227, Y.228, N.231, L.232, I.235, A.305, L.306 Ligands: CLR.6 10 PLIP interactions: 5 interactions with chain A, 5 interactions with chain F Hydrophobic interactions: A:V.164, A:V.164, A:Y.167, A:K.175, A:I.248, F:W.227, F:W.227, F:Y.228, F:L.232, F:I.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhuang, Y. et al., Molecular recognition of morphine and fentanyl by the human mu-opioid receptor. Cell (2022)

Release Date

2022-11-09

Peptides

Mu-type opioid receptor: AF
Guanine nucleotide-binding protein G(i) subunit alpha-1: BG
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: D
scFV16: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

F
M

B
A

G
F

C
B

D
C

E
E

Membrane

We predict this structure to be a membrane protein.
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Mu-type opioid receptor

Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

scFV16

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