SMTL ID : 8etc.1

Fkbp39 associated nascent 60S ribosome State 4

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain 7: C.19, C.22, C.34, C.37 4 PLIP interactions: 4 interactions with chain 7 Metal complexes: 7:C.19, 7:C.22, 7:C.34, 7:C.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ugolini, I. et al., Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell (2022)

Release Date

2022-11-30

Peptides

Protein mak16: C
60S ribosomal protein L39: D
60S ribosomal protein L3-A: E
60S ribosomal protein L4-B: F
60S ribosomal protein L6: G
60S ribosomal protein L7-B: H
60S ribosomal protein L8: I
60S ribosomal protein L9-A: J
60S ribosomal protein L13: K
60S ribosomal protein L14: L
60S ribosomal protein L15-A: M
60S ribosomal protein L16-B: N
60S ribosomal protein L17-A: O
60S ribosomal protein L18-A: P
60S ribosomal protein L19-A: Q
60S ribosomal protein L20-A: R
60S ribosomal protein L22: S
60S ribosomal protein L23-A: T
Ribosome assembly factor mrt4: U
60S ribosomal protein L25-A: V
60S ribosomal protein L26: W
60S ribosomal protein L27-A: X
60S ribosomal protein L28-A: Y
Probable nucleolar GTP-binding protein 1: Z
60S ribosomal protein L30-2: 0
60S ribosomal protein L31: 1
60S ribosomal protein L32-A: 2
60S ribosomal protein L33-B: 3
60S ribosomal protein L34-A: 4
60S ribosomal protein L35: 5
60S ribosomal protein L36-B: 6
60S ribosomal protein L37-B: 7
60S ribosomal protein L38-1: 8
Ribosome biogenesis protein nsa2: 9
GTPase grn1: a
Ribosome biogenesis protein rlp24: b
AdoMet-dependent rRNA methyltransferase spb1: c
Eukaryotic translation initiation factor 6: d
UPF0642 protein C32H8.05: e
60S ribosomal protein L21-A: f

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
3

D
8

E
B

F
C

G
E

H
F

I
G

J
H

K
L

L
M

M
N

N
O

O
P

P
Q

Q
R

R
S

S
U

T
V

U
W

V
X

W
Y

X
Z

Y
a

Z
b

0
c

1
d

2
e

3
f

4
g

5
h

6
i

7
j

8
k

9
r

a
s

b
u

c
w

d
y

e
z

f
T

Protein mak16

60S ribosomal protein L39

60S ribosomal protein L3-A

60S ribosomal protein L4-B

60S ribosomal protein L6

60S ribosomal protein L7-B

60S ribosomal protein L8

60S ribosomal protein L9-A

60S ribosomal protein L13

60S ribosomal protein L14

60S ribosomal protein L15-A

60S ribosomal protein L16-B

60S ribosomal protein L17-A

60S ribosomal protein L18-A

60S ribosomal protein L19-A

60S ribosomal protein L20-A

60S ribosomal protein L22

60S ribosomal protein L23-A

Ribosome assembly factor mrt4

60S ribosomal protein L25-A

60S ribosomal protein L26

60S ribosomal protein L27-A

60S ribosomal protein L28-A

Probable nucleolar GTP-binding protein 1

60S ribosomal protein L30-2

60S ribosomal protein L31

60S ribosomal protein L32-A

60S ribosomal protein L33-B

60S ribosomal protein L34-A

60S ribosomal protein L35

60S ribosomal protein L36-B

60S ribosomal protein L37-B

60S ribosomal protein L38-1

Ribosome biogenesis protein nsa2

GTPase grn1

Ribosome biogenesis protein rlp24

AdoMet-dependent rRNA methyltransferase spb1

Eukaryotic translation initiation factor 6

UPF0642 protein C32H8.05

60S ribosomal protein L21-A

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