SMTL ID : 8eti.1

Fkbp39 associated 60S nascent ribosome State 1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain 7: C.19, C.22, C.34, C.37 4 PLIP interactions: 4 interactions with chain 7 Metal complexes: 7:C.19, 7:C.22, 7:C.34, 7:C.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ugolini, I. et al., Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell (2022)

Release Date

2022-11-30

Peptides

Protein mak16: C
Ribosomal RNA-processing protein 1 homolog: D
Ribosome biogenesis protein nsa1: E
Ribosome biogenesis protein brx1: G
60S ribosomal protein L3-A: H
60S ribosomal protein L4-B: I
ATP-dependent RNA helicase has1: J
60S ribosomal protein L6: K
60S ribosomal protein L7-B: L
60S ribosomal protein L8: M
60S ribosomal protein L9-A: N
Probable rRNA-processing protein ebp2: O
Putative ribosome biogenesis protein C8F11.04: P
60S ribosomal protein L13: Q
60S ribosomal protein L14: R
60S ribosomal protein L15-A: S
60S ribosomal protein L16-B: T
60S ribosomal protein L17-A: U
60S ribosomal protein L18-A: V
60S ribosomal protein L20-A: W
60S ribosomal protein L23-A: X
Ribosome assembly factor mrt4: Y
60S ribosomal protein L25-A: Z
60S ribosomal protein L26: 0
Probable nucleolar GTP-binding protein 1: 1
60S ribosomal protein L31: 2
60S ribosomal protein L32-A: 3
60S ribosomal protein L33-B: 4
60S ribosomal protein L35: 5
60S ribosomal protein L36-B: 6
60S ribosomal protein L37-B: 7
Ribosome biogenesis protein erb1: 8
Pescadillo homolog: 9
Uncharacterized RNA-binding protein C1827.05c: a
Ribosome biogenesis protein nsa2: b
60S ribosomal protein L7-A: c
Ribosome biogenesis protein rlp24: d
Nucleolar protein 16: e
Brix domain-containing protein C4F8.04: f
Eukaryotic translation initiation factor 6: g
UPF0642 protein C32H8.05: h
60S ribosomal protein L21-A: i

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
3

D
4

E
5

G
A

H
B

I
C

J
D

K
E

L
F

M
G

N
H

O
J

P
K

Q
L

R
M

S
N

T
O

U
P

V
Q

W
S

X
V

Y
W

Z
X

0
Y

1
b

2
d

3
e

4
f

5
h

6
i

7
j

8
m

9
n

a
o

b
r

c
t

d
u

e
v

f
x

g
y

h
z

i
T

Protein mak16

Ribosomal RNA-processing protein 1 homolog

Ribosome biogenesis protein nsa1

Ribosome biogenesis protein brx1

60S ribosomal protein L3-A

60S ribosomal protein L4-B

ATP-dependent RNA helicase has1

60S ribosomal protein L6

60S ribosomal protein L7-B

60S ribosomal protein L8

60S ribosomal protein L9-A

Probable rRNA-processing protein ebp2

Putative ribosome biogenesis protein C8F11.04

60S ribosomal protein L13

60S ribosomal protein L14

60S ribosomal protein L15-A

60S ribosomal protein L16-B

60S ribosomal protein L17-A

60S ribosomal protein L18-A

60S ribosomal protein L20-A

60S ribosomal protein L23-A

Ribosome assembly factor mrt4

60S ribosomal protein L25-A

60S ribosomal protein L26

Probable nucleolar GTP-binding protein 1

60S ribosomal protein L31

60S ribosomal protein L32-A

60S ribosomal protein L33-B

60S ribosomal protein L35

60S ribosomal protein L36-B

60S ribosomal protein L37-B

Ribosome biogenesis protein erb1

Pescadillo homolog

Uncharacterized RNA-binding protein C1827.05c

Ribosome biogenesis protein nsa2

60S ribosomal protein L7-A

Ribosome biogenesis protein rlp24

Nucleolar protein 16

Brix domain-containing protein C4F8.04

Eukaryotic translation initiation factor 6

UPF0642 protein C32H8.05

60S ribosomal protein L21-A

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