SMTL ID : 8eui.1

Ytm1 associated nascent 60S ribosome (-fkbp39) State 3

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain d: C.19, C.22, C.34, C.37 4 PLIP interactions: 4 interactions with chain d Metal complexes: d:C.19, d:C.22, d:C.34, d:C.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ugolini, I. et al., Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell (2022)

Release Date

2022-11-30

Peptides

Protein mak16: C
60S ribosomal protein L39: D
60S ribosomal protein L2-A: F
60S ribosomal protein L3-A: G
60S ribosomal protein L4-B: H
60S ribosomal protein L5-A: I
60S ribosomal protein L6: J
60S ribosomal protein L7-B: K
60S ribosomal protein L8: L
60S ribosomal protein L9-A: M
60S ribosomal protein L10-A: N
60S ribosomal protein L11-A: O
60S ribosomal protein L43-A: P
60S ribosomal protein L13: Q
60S ribosomal protein L14: R
60S ribosomal protein L15-A: S
60S ribosomal protein L16-B: T
60S ribosomal protein L17-A: U
60S ribosomal protein L18-A: V
60S ribosomal protein L19-A: W
60S ribosomal protein L20-A: X
60S ribosomal protein L21-A: Y
60S ribosomal protein L22: Z
60S ribosomal protein L23-A: 0
60S ribosomal protein L25-A: 1
60S ribosomal protein L26: 2
60S ribosomal protein L27-A: 3
60S ribosomal protein L28-A: 4
60S ribosomal protein L29: 5
60S ribosomal protein L30-2: 6
60S ribosomal protein L31: 7
60S ribosomal protein L32-A: 8
60S ribosomal protein L33-B: 9
60S ribosomal protein L34-A: a
60S ribosomal protein L35: b
60S ribosomal protein L36-B: c
60S ribosomal protein L37-B: d
60S ribosomal protein L38-1: e
Ribosome biogenesis protein erb1: f
Pescadillo homolog: g
60S ribosomal protein L42: h
Ribosome biogenesis protein ytm1: i
Ribosome biogenesis protein rlp24: j

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
3

D
8

F
A

G
B

H
C

I
D

J
E

K
F

L
G

M
H

N
I

O
J

P
K

Q
L

R
M

S
N

T
O

U
P

V
Q

W
R

X
S

Y
T

Z
U

0
V

1
X

2
Y

3
Z

4
a

5
b

6
c

7
d

8
e

9
f

a
g

b
h

c
i

d
j

e
k

f
m

g
n

h
o

i
p

j
u

Protein mak16

60S ribosomal protein L39

60S ribosomal protein L2-A

60S ribosomal protein L3-A

60S ribosomal protein L4-B

60S ribosomal protein L5-A

60S ribosomal protein L6

60S ribosomal protein L7-B

60S ribosomal protein L8

60S ribosomal protein L9-A

60S ribosomal protein L10-A

60S ribosomal protein L11-A

60S ribosomal protein L43-A

60S ribosomal protein L13

60S ribosomal protein L14

60S ribosomal protein L15-A

60S ribosomal protein L16-B

60S ribosomal protein L17-A

60S ribosomal protein L18-A

60S ribosomal protein L19-A

60S ribosomal protein L20-A

60S ribosomal protein L21-A

60S ribosomal protein L22

60S ribosomal protein L23-A

60S ribosomal protein L25-A

60S ribosomal protein L26

60S ribosomal protein L27-A

60S ribosomal protein L28-A

60S ribosomal protein L29

60S ribosomal protein L30-2

60S ribosomal protein L31

60S ribosomal protein L32-A

60S ribosomal protein L33-B

60S ribosomal protein L34-A

60S ribosomal protein L35

60S ribosomal protein L36-B

60S ribosomal protein L37-B

60S ribosomal protein L38-1

Ribosome biogenesis protein erb1

Pescadillo homolog

60S ribosomal protein L42

Ribosome biogenesis protein ytm1

Ribosome biogenesis protein rlp24

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