SMTL ID : 8etg.1

Fkbp39 associated 60S nascent ribosome State 3

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain 9: C.19, C.22, C.34, C.37 4 PLIP interactions: 4 interactions with chain 9 Metal complexes: 9:C.19, 9:C.22, 9:C.34, 9:C.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ugolini, I. et al., Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell (2022)

Release Date

2022-11-30

Peptides

Protein mak16: C
Ribosome biogenesis protein brx1: D
60S ribosomal protein L3-A: E
60S ribosomal protein L4-B: F
ATP-dependent RNA helicase has1: G
60S ribosomal protein L6: H
60S ribosomal protein L7-B: I
60S ribosomal protein L8: J
60S ribosomal protein L9-A: K
Putative ribosome biogenesis protein C8F11.04: L
60S ribosomal protein L13: M
60S ribosomal protein L14: N
60S ribosomal protein L15-A: O
60S ribosomal protein L16-B: P
60S ribosomal protein L17-A: Q
60S ribosomal protein L18-A: R
60S ribosomal protein L19-A: S
60S ribosomal protein L20-A: T
60S ribosomal protein L22: U
60S ribosomal protein L23-A: V
Ribosome assembly factor mrt4: W
60S ribosomal protein L25-A: X
60S ribosomal protein L26: Y
60S ribosomal protein L27-A: Z
60S ribosomal protein L28-A: 0
Probable nucleolar GTP-binding protein 1: 1
60S ribosomal protein L30-2: 2
60S ribosomal protein L31: 3
60S ribosomal protein L32-A: 4
60S ribosomal protein L33-B: 5
60S ribosomal protein L34-A: 6
60S ribosomal protein L35: 7
60S ribosomal protein L36-B: 8
60S ribosomal protein L37-B: 9
60S ribosomal protein L38-1: a
Ribosome biogenesis protein erb1: b
Pescadillo homolog: c
Uncharacterized RNA-binding protein C1827.05c: d
Ribosome biogenesis protein ytm1: e
Ribosome biogenesis protein nsa2: f
60S ribosomal protein L7-A: g
Ribosome biogenesis protein rlp24: h
Nucleolar protein 16: i
Eukaryotic translation initiation factor 6: j
60S ribosomal protein L21-A: k

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
3

D
A

E
B

F
C

G
D

H
E

I
F

J
G

K
H

L
K

M
L

N
M

O
N

P
O

Q
P

R
Q

S
R

T
S

U
U

V
V

W
W

X
X

Y
Y

Z
Z

0
a

1
b

2
c

3
d

4
e

5
f

6
g

7
h

8
i

9
j

a
k

b
m

c
n

d
o

e
p

f
r

g
t

h
u

i
v

j
y

k
T

Protein mak16

Ribosome biogenesis protein brx1

60S ribosomal protein L3-A

60S ribosomal protein L4-B

ATP-dependent RNA helicase has1

60S ribosomal protein L6

60S ribosomal protein L7-B

60S ribosomal protein L8

60S ribosomal protein L9-A

Putative ribosome biogenesis protein C8F11.04

60S ribosomal protein L13

60S ribosomal protein L14

60S ribosomal protein L15-A

60S ribosomal protein L16-B

60S ribosomal protein L17-A

60S ribosomal protein L18-A

60S ribosomal protein L19-A

60S ribosomal protein L20-A

60S ribosomal protein L22

60S ribosomal protein L23-A

Ribosome assembly factor mrt4

60S ribosomal protein L25-A

60S ribosomal protein L26

60S ribosomal protein L27-A

60S ribosomal protein L28-A

Probable nucleolar GTP-binding protein 1

60S ribosomal protein L30-2

60S ribosomal protein L31

60S ribosomal protein L32-A

60S ribosomal protein L33-B

60S ribosomal protein L34-A

60S ribosomal protein L35

60S ribosomal protein L36-B

60S ribosomal protein L37-B

60S ribosomal protein L38-1

Ribosome biogenesis protein erb1

Pescadillo homolog

Uncharacterized RNA-binding protein C1827.05c

Ribosome biogenesis protein ytm1

Ribosome biogenesis protein nsa2

60S ribosomal protein L7-A

Ribosome biogenesis protein rlp24

Nucleolar protein 16

Eukaryotic translation initiation factor 6

60S ribosomal protein L21-A

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