SMTL ID : 8gxi.1

The crystal structure of SARS-CoV-2 main protease in complex with 14c

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

homo-dimer

Ligands

2 x 0BO: N-[(2S)-3-cyclohexyl-1-[[(2S,3R)-4-(cyclopropylamino)-3-oxidanyl-4-oxidanylidene-1-[(3S)-2-oxidanylidenepiperidin-3-yl]butan-2-yl]amino]-1-oxidanylidene-propan-2-yl]-1-benzofuran-2-carboxamide(Covalent)

0BO.1: 18 residues within 4Å: Chain A: T.25, T.26, H.41, M.49, Y.54, F.140, N.142, G.143, S.144, C.145, H.163, H.164, M.165, E.166, H.172, D.187, R.188, Q.189 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:T.25, A:H.41, A:D.187, A:Q.189 Hydrogen bonds: A:F.140, A:G.143, A:C.145, A:H.164, A:E.166, A:Q.189 0BO.2: 18 residues within 4Å: Chain B: T.25, T.26, H.41, M.49, Y.54, F.140, N.142, G.143, S.144, C.145, H.163, H.164, M.165, E.166, H.172, D.187, R.188, Q.189 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:T.25, B:H.41, B:D.187, B:Q.189 Hydrogen bonds: B:F.140, B:G.143, B:C.145, B:H.164, B:E.166, B:Q.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., The crystal structure of SARS-CoV-2 main protease in complex with 14c. To Be Published

Release Date

2023-09-27

Peptides

3C-like proteinase nsp5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3C-like proteinase nsp5

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