- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 12 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine
- 4 x CDL: CARDIOLIPIN
CDL.6: 26 residues within 4Å:- Chain D: L.16, S.22, M.23, R.116, K.119, Y.120, L.123, I.126, M.150, L.153
- Chain E: P.353, L.354, T.357, W.358, L.360, M.361, L.364, L.369, P.371
- Chain P: D.64, L.68, M.71, K.72, L.75
- Ligands: 3PE.2, 3PE.9
19 PLIP interactions:9 interactions with chain D, 7 interactions with chain E, 3 interactions with chain P- Hydrophobic interactions: D:L.16, D:L.123, D:L.123, D:I.126, E:T.357, E:W.358, E:L.360, E:L.364, E:L.369, E:P.371, P:K.72, P:L.75, P:L.75
- Hydrogen bonds: D:R.116, D:Y.120, E:T.357
- Salt bridges: D:K.119, D:K.119, D:K.119
CDL.7: 22 residues within 4Å:- Chain D: K.560, T.561, S.565, T.568, L.569, N.572, M.573, L.576
- Chain J: G.31, Y.61, T.64, I.68, L.103, T.107, G.111, T.112, A.114, M.115, V.118, Y.119, M.120
- Ligands: 3PE.16
15 PLIP interactions:9 interactions with chain J, 6 interactions with chain D- Hydrophobic interactions: J:Y.61, J:T.64, J:I.68, J:L.103, J:T.107, J:A.114, J:V.118, J:V.118, J:Y.119, D:K.560, D:L.576, D:L.576
- Hydrogen bonds: D:N.572, D:L.576
- Salt bridges: D:K.560
CDL.15: 22 residues within 4Å:- Chain E: M.55
- Chain F: L.246, P.256, L.257, T.334, M.335, P.338
- Chain I: F.169, W.170, T.171, V.172
- Chain L: K.25, N.27, D.28, P.29, V.32, Y.33
- Chain N: F.22, L.26, K.29, D.30
- Ligands: 3PE.10
12 PLIP interactions:3 interactions with chain I, 4 interactions with chain F, 3 interactions with chain N, 2 interactions with chain L- Hydrophobic interactions: I:F.169, I:W.170, I:W.170, F:L.246, F:P.256, F:L.257, F:P.338, N:F.22, L:Y.33
- Hydrogen bonds: N:D.30, N:K.33
- Salt bridges: L:K.25
CDL.17: 30 residues within 4Å:- Chain D: W.66, W.68, L.76, K.77, M.78, N.136, F.138, Q.139, I.142
- Chain E: T.449
- Chain O: V.98, T.101, T.102, A.105, Y.106
- Chain P: V.82, I.83, I.86, T.87, N.90, I.91, E.95, H.115
- Chain Q: W.80, F.81, Y.84, H.89
- Chain X: R.49
- Ligands: 3PE.2, 3PE.9
24 PLIP interactions:3 interactions with chain O, 8 interactions with chain P, 5 interactions with chain Q, 6 interactions with chain D, 1 interactions with chain E, 1 interactions with chain X- Hydrophobic interactions: O:V.98, O:A.105, P:V.82, P:I.83, P:I.86, P:T.87, Q:W.80, Q:F.81, Q:Y.84, Q:Y.84, D:W.66, D:W.68, D:W.68, D:L.76, D:F.138, D:I.142, E:T.449
- Hydrogen bonds: O:Y.106, P:N.90, P:E.95, P:E.95
- Salt bridges: P:H.115, Q:H.89, X:R.49
- 1 x ADP: ADENOSINE-5'-DIPHOSPHATE
ADP.14: 14 residues within 4Å:- Chain G: I.66, C.67, S.68, K.70, L.114, Y.118, Q.132, L.135, R.139, R.161, D.166, F.169, K.221, E.226
14 PLIP interactions:14 interactions with chain G- Hydrogen bonds: G:C.67, G:S.68, G:S.68, G:Y.118, G:Y.118, G:Q.132, G:R.139, G:R.161, G:D.166, G:E.226
- Salt bridges: G:K.70
- pi-Stacking: G:F.169, G:F.169
- pi-Cation interactions: G:R.161
- 1 x EHZ: ~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shin, Y.-C. et al., Respiratory complex Membrane domain of CI, focus-refined of type IA, Wild type mouse under cold temperature. To Be Published
- Release Date
- 2024-09-18
- Peptides
- NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial: A
NADH-ubiquinone oxidoreductase chain 6: B
NADH-ubiquinone oxidoreductase chain 4L: C
NADH-ubiquinone oxidoreductase chain 5: D
NADH-ubiquinone oxidoreductase chain 4: E
NADH-ubiquinone oxidoreductase chain 2: F
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial: G
Acyl carrier protein, mitochondrial: H
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8: I
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11: J
NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial: K
NADH dehydrogenase [ubiquinone] 1 subunit C2: L
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5: M
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1: N
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial: O
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial: P
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6: Q
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial: R
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3: S
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial: T
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4: U
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9: V
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7: W
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10: X - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
JC
KD
LE
MF
NG
OH
UI
XJ
YK
cL
dM
eN
fO
gP
hQ
iR
jS
kT
lU
mV
nW
oX
p - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 8ib6.1
Respiratory complex Membrane domain of CI, focus-refined of type IA, Wild type mouse under cold temperature
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial
NADH-ubiquinone oxidoreductase chain 6
NADH-ubiquinone oxidoreductase chain 4L
NADH-ubiquinone oxidoreductase chain 5
NADH-ubiquinone oxidoreductase chain 4
NADH-ubiquinone oxidoreductase chain 2
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial
Acyl carrier protein, mitochondrial
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11
NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial
NADH dehydrogenase [ubiquinone] 1 subunit C2
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10
Related Entries With Identical Sequence
6g2j.1 | 6g72.1 | 6zr2.1 | 6ztq.1 | 7ak5.1 | 7ak6.1 | 7b93.1 | 7psa.1 | 8c2s.1 | 8ca3.1 | 8ca5.1 | 8iao.4 | 8iao.10 | 8iao.11 | 8iao.12 | 8iao.13 | 8iao.14 | 8iao.15 | 8iao.20 | 8iao.21 | 8iao.24 | 8iao.25 | 8iao.29 | 8iao.30 | 8iao.31 | 8iao.32 | 8iao.33 | 8iao.34 | 8iao.35 | 8iao.36 more...less...8iao.37 | 8iao.38 | 8iao.39 | 8iao.40 | 8iao.41 | 8iao.42 | 8iap.1 | 8iaq.1 | 8ib4.4 | 8ib4.10 | 8ib4.11 | 8ib4.12 | 8ib4.13 | 8ib4.14 | 8ib4.15 | 8ib4.20 | 8ib4.21 | 8ib4.24 | 8ib4.25 | 8ib4.29 | 8ib4.30 | 8ib4.31 | 8ib4.32 | 8ib4.33 | 8ib4.34 | 8ib4.35 | 8ib4.36 | 8ib4.37 | 8ib4.38 | 8ib4.39 | 8ib4.40 | 8ib4.41 | 8ib4.42 | 8ib5.1 | 8ib9.4 | 8ib9.10 | 8ib9.11 | 8ib9.12 | 8ib9.13 | 8ib9.14 | 8ib9.15 | 8ib9.20 | 8ib9.21 | 8ib9.24 | 8ib9.25 | 8ib9.29 | 8ib9.30 | 8ib9.31 | 8ib9.32 | 8ib9.33 | 8ib9.34 | 8ib9.35 | 8ib9.36 | 8ib9.37 | 8ib9.38 | 8ib9.39 | 8ib9.40 | 8ib9.41 | 8ib9.42 | 8iba.1 | 8ibb.1 | 8ibd.4 | 8ibd.11 | 8ibd.12 | 8ibd.13 | 8ibd.14 | 8ibd.15 | 8ibd.20 | 8ibd.21 | 8ibd.24 | 8ibd.25 | 8ibd.29 | 8ibd.30 | 8ibd.31 | 8ibd.32 | 8ibd.33 | 8ibd.34 | 8ibd.35 | 8ibd.36 | 8ibd.37 | 8ibd.38 | 8ibd.39 | 8ibd.40 | 8ibd.41 | 8ibd.42 | 8ibe.1 | 8ibf.1 | 8ic2.4 | 8ic2.10 | 8ic2.11 | 8ic2.12 | 8ic2.13 | 8ic2.14 | 8ic2.15 | 8ic2.20 | 8ic2.21 | 8ic2.24 | 8ic2.25 | 8ic2.29 | 8ic2.30 | 8ic2.31 | 8ic2.32 | 8ic2.33 | 8ic2.34 | 8ic2.35 | 8ic2.36 | 8ic2.37 | 8ic2.38 | 8ic2.39 | 8ic2.40 | 8ic2.41 | 8ic2.42 | 8ic3.1 | 8ic4.1 | 8olt.1 | 8om1.1 | 8pw5.38 | 8pw5.47 | 8pw5.55 | 8pw5.56 | 8pw5.57 | 8pw5.58 | 8pw5.59 | 8pw5.60 | 8pw5.61 | 8pw5.62 | 8pw5.67 | 8pw5.68 | 8pw5.69 | 8pw5.70 | 8pw5.71 | 8pw5.72 | 8pw5.73 | 8pw5.74 | 8pw5.75 | 8pw5.76 | 8pw5.77 | 8pw5.78 | 8pw5.79 | 8pw5.80 | 8pw6.37 | 8pw6.46 | 8pw6.54 | 8pw6.55 | 8pw6.56 | 8pw6.57 | 8pw6.58 | 8pw6.59 | 8pw6.60 | 8pw6.61 | 8pw6.66 | 8pw6.67 | 8pw6.68 | 8pw6.69 | 8pw6.70 | 8pw6.71 | 8pw6.72 | 8pw6.73 | 8pw6.74 | 8pw6.75 | 8pw6.76 | 8pw6.77 | 8pw6.78 | 8pw6.79 | 8pw7.37 | 8pw7.46 | 8pw7.54 | 8pw7.55 | 8pw7.56 | 8pw7.57 | 8pw7.58 | 8pw7.59 | 8pw7.60 | 8pw7.61 | 8pw7.66 | 8pw7.67 | 8pw7.68 | 8pw7.69 | 8pw7.70 | 8pw7.71 | 8pw7.72 | 8pw7.73 | 8pw7.74 | 8pw7.75 | 8pw7.76 | 8pw7.77 | 8pw7.78 | 8pw7.79 | 8rgp.1 | 8rgq.1 | 8rgr.1 | 8rgt.1