SMTL ID : 8j5k.1

Structural insights into photosystem II supercomplex and trimeric FCP antennae of a centric diatom Cyclotella meneghiniana

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
Ligands
2 x OEX: CA-MN4-O5 CLUSTER(Non-covalent)
2 x FE2: FE (II) ION(Non-covalent)
206 x CLA: CHLOROPHYLL A(Non-covalent)(Non-functional Binders)
4 x PHO: PHEOPHYTIN A(Non-covalent)
20 x BCR: BETA-CAROTENE(Non-covalent)
8 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
4 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
14 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
22 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
2 x CL: CHLORIDE ION(Non-functional Binders)
8 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
2 x BCT: BICARBONATE ION(Non-functional Binders)
4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
24 x A86: (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate(Non-covalent)
2 x ET4: (1~{R})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15-octaen-17-ynyl]cyclohex-3-en-1-ol(Non-covalent)
12 x DD6: (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Zhao, S. et al., Structural insights into photosystem II supercomplex and trimeric FCP antennae of a centric diatom Cyclotella meneghiniana. Nat Commun (2023)
Release Date
2023-12-20
Peptides
PsbA: AW
PsbB: BX
PsbC: CY
PsbD: DZ
PsbE: E0
PsbF: F1
PsbH: G2
PsbI: H3
PsbJ: I4
PsbK: J5
PsbL: K6
PsbM: L7
Psb34: M8
PsbO: N9
PsbQ': Oa
PsbT: Pb
PsbU: Qc
PsbV: Rd
PsbW: Se
PsbX: Tf
PsbY: Ug
PsbZ: Vh
FCPII-G, fucoxanthin chlorophyll a/c binding protein: ir
FCPII-H2, fucoxanthin chlorophyll a/c binding protein: js
FCPII-H1, fucoxanthin chlorophyll a/c binding protein: kt
FCPII-I, fucoxanthin chlorophyll a/c binding protein: lo
FCPII-K, fucoxanthin chlorophyll a/c binding protein: mp
FCPII-J, fucoxanthin chlorophyll a/c binding protein: nq
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
W
a
B
B
X
b
C
C
Y
c
D
D
Z
d
E
E
0
e
F
F
1
f
G
H
2
h
H
I
3
i
I
J
4
j
J
K
5
k
K
L
6
l
L
M
7
m
M
N
8
n
N
O
9
o
O
Q
a
q
P
T
b
t
Q
U
c
u
R
V
d
v
S
W
e
w
T
X
f
x
U
Y
g
y
V
Z
h
z
i
5
r
0
j
7
s
2
k
6
t
1
l
p
o
P
m
4
p
9
n
3
q
8
Membrane
We predict this structure to be a membrane protein.

PsbA

Toggle Identical (AW)

PsbB

Toggle Identical (BX)

PsbC

Toggle Identical (CY)

PsbD

Toggle Identical (DZ)

PsbE

Toggle Identical (E0)

PsbF

Toggle Identical (F1)

PsbH

Toggle Identical (G2)

PsbI

Toggle Identical (H3)

PsbJ

Toggle Identical (I4)

PsbK

Toggle Identical (J5)

PsbL

Toggle Identical (K6)

PsbM

Toggle Identical (L7)

Psb34

Toggle Identical (M8)

PsbO

Toggle Identical (N9)

PsbQ'

Toggle Identical (Oa)

PsbT

Toggle Identical (Pb)

PsbU

Toggle Identical (Qc)

PsbV

Toggle Identical (Rd)

PsbW

Toggle Identical (Se)

PsbX

Toggle Identical (Tf)

PsbY

Toggle Identical (Ug)

PsbZ

Toggle Identical (Vh)

FCPII-G, fucoxanthin chlorophyll a/c binding protein

Toggle Identical (ir)

FCPII-H2, fucoxanthin chlorophyll a/c binding protein

Toggle Identical (js)

FCPII-H1, fucoxanthin chlorophyll a/c binding protein

Toggle Identical (kt)

FCPII-I, fucoxanthin chlorophyll a/c binding protein

Toggle Identical (lo)

FCPII-K, fucoxanthin chlorophyll a/c binding protein

Toggle Identical (mp)

FCPII-J, fucoxanthin chlorophyll a/c binding protein

Toggle Identical (nq)

Related Entries With Identical Sequence

1pyh.1 | 1z56.1 | 2jes.1 | 3mk7.1 | 3mk7.2 | 3mk7.3 | 3mk7.4 | 4uq8.1 | 4v9j.1 | 4v9j.2 | 4v9k.1 | 4v9k.2 | 4v9l.1 | 4v9l.2 | 4v9m.1 | 4v9m.2 | 4w29.1 | 4w29.2 | 4wz7.1 | 5cod.1 | 5cod.2 | 5cod.3 | 5cod.4 | 5cod.5 | 5cod.6 | 5j4z.39 | 5j7y.39 | 5j8k.39 | 5lqy.1 | 5lqz.1  more...