SMTL ID : 8kdf.1

Structure of LAT1-CD98hc in complex with JPH203, focused on TMD

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.89 Å

Oligo State

hetero-1-1-mer

Ligands

2 x CLR: CHOLESTEROL(Non-covalent)

CLR.1: 8 residues within 4Å: Chain A: W.194, L.198, V.202, I.205 Chain B: F.152, V.174, L.177, F.336 9 PLIP interactions: 4 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:W.194, A:L.198, A:V.202, A:I.205, B:F.152, B:V.174, B:V.174, B:L.177, B:F.336 CLR.2: 6 residues within 4Å: Chain A: M.197 Chain B: K.172, L.173, V.382, L.385, F.389 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.173, B:V.382, B:V.382, B:L.385, B:F.389

1 x LBN: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine(Non-covalent)

LBN.3: 11 residues within 4Å: Chain A: R.183, L.187, F.190 Chain B: A.184, C.187, Y.188, H.367, Q.369, L.370, V.378, M.500 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Y.188, B:V.378, B:M.500, A:F.190, A:F.190 Hydrogen bonds: B:Q.369 Salt bridges: B:H.367

1 x VRW: Nanvuranlat(Non-covalent)

VRW.4: 19 residues within 4Å: Chain B: T.62, I.63, I.64, G.65, S.66, G.67, I.140, S.144, I.147, F.252, A.253, Y.254, G.255, G.256, Y.259, Y.289, I.397, F.403, N.404 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:I.140, B:I.147, B:F.252, B:F.252, B:I.397 Hydrogen bonds: B:S.66, B:G.67, B:G.255, B:N.404 pi-Stacking: B:F.252 Halogen bonds: B:T.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, Y., Structural basis of anticancer drug recognition and amino acid transport by LAT1. To Be Published

Release Date

2025-02-12

Peptides

4F2 cell-surface antigen heavy chain: A
Large neutral amino acids transporter small subunit 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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4F2 cell-surface antigen heavy chain

Large neutral amino acids transporter small subunit 1

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