SMTL ID : 8kdh.1

Structure of LAT1-CD98hc in complex with BCH, focused on TMD

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.78 Å

Oligo State

hetero-1-1-mer

Ligands

2 x CLR: CHOLESTEROL(Non-covalent)

CLR.1: 8 residues within 4Å: Chain A: L.198, V.202, I.205, R.210 Chain B: F.152, L.160, V.174, L.177 9 PLIP interactions: 3 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:L.198, A:I.205, B:F.152, B:L.160, B:L.160, B:V.174, B:V.174, B:L.177 Hydrogen bonds: A:R.210 CLR.2: 11 residues within 4Å: Chain A: F.190, G.193, M.197 Chain B: E.169, K.172, L.173, C.176, L.180, L.385, A.388, F.389 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:K.172, B:L.180, B:L.385, B:A.388, B:F.389, B:F.389, A:F.190 Hydrogen bonds: B:E.169

1 x LBN: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine(Non-covalent)

LBN.3: 13 residues within 4Å: Chain A: R.183, L.187, F.190 Chain B: L.180, T.183, C.187, Y.188, H.367, Q.369, V.382, L.499, M.500, Q.501 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:L.180, B:T.183, B:Y.188, B:V.382, A:F.190, A:F.190 Hydrogen bonds: B:Y.188 Salt bridges: B:H.367

1 x VU0: (1~{S},2~{R},4~{R})-2-azanylbicyclo[2.2.1]heptane-2-carboxylic acid(Non-covalent)

VU0.4: 12 residues within 4Å: Chain B: T.62, I.63, G.65, S.66, G.67, V.148, F.252, A.253, G.255, Y.259, S.338, F.400 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:V.148, B:F.252, B:Y.259, B:F.400 Hydrogen bonds: B:S.66, B:G.67, B:F.252, B:G.255, B:S.338

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, Y., Structural basis of anticancer drug recognition and amino acid transport by LAT1. To Be Published

Release Date

2025-02-12

Peptides

4F2 cell-surface antigen heavy chain: A
Large neutral amino acids transporter small subunit 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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4F2 cell-surface antigen heavy chain

Large neutral amino acids transporter small subunit 1

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