SMTL ID : 8p7o.1

Isopenicillin N synthase in complex with Fe and Aad-Cys-[(S)-1-amino-2-methylpropane-1-sulfonic acid]

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: P.16, A.24, R.27 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.27 Salt bridges: A:R.27 SO4.2: 4 residues within 4Å: Chain A: R.37, N.263, K.266, R.300 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.37, A:K.266, A:R.300 SO4.5: 2 residues within 4Å: Chain A: D.205, G.206 No protein-ligand interaction detected (PLIP)

1 x FE: FE (III) ION(Non-covalent)

FE.3: 4 residues within 4Å: Chain A: H.214, D.216, H.270 Ligands: X5L.4 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.214, A:D.216, A:H.270, H2O.1, H2O.8

1 x X5L: (2~{S})-2-azanyl-6-[[(2~{R})-1-[[(1~{S})-2-methyl-1-sulfo-propyl]amino]-1-oxidanylidene-3-sulfanyl-propan-2-yl]amino]-6-oxidanylidene-hexanoic acid(Non-covalent)

X5L.4: 18 residues within 4Å: Chain A: R.87, Y.91, V.100, C.104, S.183, I.187, Y.189, F.211, H.214, D.216, V.272, S.281, P.283, F.285, L.321, L.324, T.331 Ligands: FE.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.100, A:I.187, A:Y.189, A:F.211, A:L.321, A:L.324, A:T.331 Hydrogen bonds: A:S.183, A:S.183, A:S.281 Water bridges: A:Y.91, A:Y.91 Salt bridges: A:R.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rabe, P. et al., Isopenicillin N synthase in complex with Fe and Aad-Cys-[(S)-1-amino-2-methylpropane-1-sulfonic acid]. To Be Published

Release Date

2024-06-12

Peptides

Isopenicillin N synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isopenicillin N synthase

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