SMTL ID : 8q7h.1

Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated and neddylated conformation - focused cullin dimer

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-1-1-mer

Ligands

10 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.2090, H.2092, C.2117, I.2119, C.2122 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.2090, A:H.2092, A:C.2117, A:C.2122 ZN.2: 4 residues within 4Å: Chain A: C.2072, C.2075, C.2095, C.2098 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.2072, A:C.2075, A:C.2095, A:C.2098 ZN.3: 4 residues within 4Å: Chain A: C.2191, C.2194, H.2200, C.2205 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.2191, A:C.2194, A:H.2200, A:C.2205 ZN.4: 4 residues within 4Å: Chain A: C.2162, C.2168, C.2183, C.2186 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.2162, A:C.2168, A:C.2183, A:C.2186 ZN.5: 4 residues within 4Å: Chain C: C.42, C.45, H.80, C.83 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.42, C:C.45, C:H.80, C:C.83 ZN.6: 4 residues within 4Å: Chain C: C.75, H.77, C.94, D.97 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:C.75, C:H.77, C:C.94, C:D.97, C:D.97 ZN.7: 4 residues within 4Å: Chain C: C.53, C.56, C.68, H.82 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.53, C:C.56, C:C.68, C:H.82 ZN.8: 4 residues within 4Å: Chain F: C.42, C.45, H.80, C.83 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.42, F:C.45, F:H.80, F:C.83 ZN.9: 4 residues within 4Å: Chain F: C.75, H.77, C.94, D.97 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.75, F:H.77, F:C.94, F:D.97 ZN.10: 4 residues within 4Å: Chain F: C.53, C.56, C.68, H.82 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.53, F:C.56, F:C.68, F:H.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Horn-Ghetko, D. et al., Noncanonical assembly, neddylation and chimeric cullin-RING/RBR ubiquitylation by the 1.8 MDa CUL9 E3 ligase complex. Nat.Struct.Mol.Biol. (2024)

Release Date

2024-04-17

Peptides

Cullin-9: AB
E3 ubiquitin-protein ligase RBX1: CF
NEDD8: D
Unknown: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

F
D

D
N

E
E

Cullin-9

E3 ubiquitin-protein ligase RBX1

NEDD8

Unknown

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