SMTL ID : 8rhz.1

Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated conformation - symmetry expanded unneddylated dimer

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain B: C.42, I.44, C.45, H.80, C.83 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.42, B:C.45, B:H.80, B:C.83 ZN.2: 4 residues within 4Å: Chain B: C.75, H.77, C.94, D.97 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:C.75, B:H.77, B:C.94, B:D.97, B:D.97 ZN.3: 4 residues within 4Å: Chain B: C.53, C.56, C.68, H.82 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.53, B:C.56, B:C.68, B:H.82 ZN.4: 4 residues within 4Å: Chain D: C.42, C.45, H.80, C.83 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.42, D:C.45, D:H.80, D:C.83 ZN.5: 4 residues within 4Å: Chain D: C.75, H.77, C.94, D.97 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.75, D:H.77, D:C.94, D:D.97 ZN.6: 4 residues within 4Å: Chain D: C.53, C.56, C.68, H.82 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.53, D:C.56, D:C.68, D:H.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Horn-Ghetko, D. et al., Noncanonical assembly, neddylation and chimeric cullin-RING/RBR ubiquitylation by the 1.8 MDa CUL9 E3 ligase complex. Nat.Struct.Mol.Biol. (2024)

Release Date

2024-04-17

Peptides

Cullin-9: AC
E3 ubiquitin-protein ligase RBX1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

B
C

D
D

Cullin-9

E3 ubiquitin-protein ligase RBX1

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