SMTL ID : 8ij1.1

Protomer 1 and 2 of the asymmetry trimer of the Cul2-Rbx1-EloBC-FEM1B ubiquitin ligase complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-2-2-2-mer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: C.42, C.45, H.80, C.83 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.42, B:C.45, B:H.80, B:C.83 ZN.2: 4 residues within 4Å: Chain B: C.53, C.56, C.68, H.82 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.53, B:C.56, B:C.68, B:H.82 ZN.3: 5 residues within 4Å: Chain B: C.75, H.77, C.94, R.99, W.101 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.75 ZN.4: 4 residues within 4Å: Chain E: H.568, D.570, C.602, H.630 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:H.568, E:D.570, E:C.602, E:H.630 ZN.5: 4 residues within 4Å: Chain I: H.568, D.570, C.602, H.630 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:H.568, I:C.602, I:H.630

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dai, Z. et al., Structural insights into the ubiquitylation strategy of the oligomeric CRL2 FEM1B E3 ubiquitin ligase. Embo J. (2024)

Release Date

2024-02-28

Peptides

Cullin-2: AF
E3 ubiquitin-protein ligase RBX1: B
Elongin-B: CG
Elongin-C: DH
Protein fem-1 homolog B: EI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

F
F

B
R

C
B

G
G

D
C

H
H

E
D

I
I

Cullin-2

E3 ubiquitin-protein ligase RBX1

Elongin-B

Elongin-C

Protein fem-1 homolog B

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