SMTL ID : 8rw0.1

Crystal structure of the adenosine A2A receptor in complex with Istradefylline

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

monomer

Ligands

1 x JQ9: 8-[(~{E})-2-(3,4-dimethoxyphenyl)ethenyl]-1,3-diethyl-7-methyl-purine-2,6-dione(Non-covalent)

JQ9.1: 14 residues within 4Å: Chain A: I.91, S.92, V.109, L.110, F.193, E.194, M.202, W.367, L.370, N.374, L.388, M.391, Y.392, I.395 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.91, A:E.194, A:W.367, A:L.370, A:L.388 Hydrogen bonds: A:N.374 Water bridges: A:S.398 pi-Stacking: A:F.193, A:F.193

3 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 8 residues within 4Å: Chain A: L.212, I.372, C.375, F.376, F.379, C.380 Ligands: OLA.4, OLA.18 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.212, A:I.372, A:F.376, A:F.376, A:F.376, A:F.379 CLR.3: 7 residues within 4Å: Chain A: F.87, A.97, A.98, G.101, I.105 Ligands: OLA.5, OLA.13 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.87, A:F.87, A:A.98, A:I.105 Hydrogen bonds: A:A.98 Water bridges: A:Q.188, A:Q.188 CLR.6: 11 residues within 4Å: Chain A: L.368, P.369, I.373, F.376, C.383, S.384, A.386, L.390 Ligands: OLA.12, OLA.18, OLA.24 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.368, A:P.369, A:I.373, A:F.376, A:L.390 Hydrogen bonds: A:S.384 Water bridges: A:S.384

23 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)

OLA.4: 4 residues within 4Å: Chain A: F.208, F.379 Ligands: CLR.2, OLA.20 Ligand excluded by PLIP OLA.5: 7 residues within 4Å: Chain A: V.82, L.83, F.87, T.90, F.95 Ligands: CLR.3, OLA.8 Ligand excluded by PLIP OLA.7: 2 residues within 4Å: Chain A: L.215, Y.222 Ligand excluded by PLIP OLA.8: 10 residues within 4Å: Chain A: A.42, I.46, G.81, P.86, T.90, T.93, F.95 Ligands: OLA.5, OLA.19, OLA.25 Ligand excluded by PLIP OLA.9: 7 residues within 4Å: Chain A: F.69, A.122, I.125, D.126, V.141, I.149, C.153 Ligand excluded by PLIP OLA.10: 7 residues within 4Å: Chain A: C.53, V.56, W.57, V.71, A.75, I.78 Ligands: OLA.11 Ligand excluded by PLIP OLA.11: 10 residues within 4Å: Chain A: Y.68, V.71, S.72, A.75, L.79, I.150, W.154, F.158 Ligands: OLA.10, OLA.16 Ligand excluded by PLIP OLA.12: 6 residues within 4Å: Chain A: S.384, H.385, P.387, W.389 Ligands: CLR.6, OLA.24 Ligand excluded by PLIP OLA.13: 5 residues within 4Å: Chain A: A.98, H.100, G.101 Ligands: CLR.3, OLA.21 Ligand excluded by PLIP OLA.14: 7 residues within 4Å: Chain A: I.41, L.44, T.400, V.403, V.404, F.407 Ligands: OLA.17 Ligand excluded by PLIP OLA.15: 4 residues within 4Å: Chain A: Y.204, F.208, A.209 Ligands: OLA.20 Ligand excluded by PLIP OLA.16: 5 residues within 4Å: Chain A: A.147, A.151, F.158 Ligands: OLA.11, OLA.21 Ligand excluded by PLIP OLA.17: 8 residues within 4Å: Chain A: G.30, V.33, Y.34, L.388, W.389, Y.392, L.393 Ligands: OLA.14 Ligand excluded by PLIP OLA.18: 4 residues within 4Å: Chain A: F.376, C.383 Ligands: CLR.2, CLR.6 Ligand excluded by PLIP OLA.19: 2 residues within 4Å: Ligands: OLA.8, OLA.25 Ligand excluded by PLIP OLA.20: 4 residues within 4Å: Chain A: Y.204, F.379 Ligands: OLA.4, OLA.15 Ligand excluded by PLIP OLA.21: 5 residues within 4Å: Chain A: H.100, F.158, M.165 Ligands: OLA.13, OLA.16 Ligand excluded by PLIP OLA.22: 1 residues within 4Å: Chain A: W.389 Ligand excluded by PLIP OLA.23: 5 residues within 4Å: Chain A: S.32, I.35, T.36, L.39 Ligands: OLA.25 Ligand excluded by PLIP OLA.24: 8 residues within 4Å: Chain A: L.365, P.369, L.390, L.393, A.394, L.397 Ligands: CLR.6, OLA.12 Ligand excluded by PLIP OLA.25: 7 residues within 4Å: Chain A: S.31, I.35, L.39, T.93 Ligands: OLA.8, OLA.19, OLA.23 Ligand excluded by PLIP OLA.26: 3 residues within 4Å: Chain A: I.152, A.159 Ligands: OLA.27 Ligand excluded by PLIP OLA.27: 3 residues within 4Å: Chain A: G.148, I.152 Ligands: OLA.26 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.28: 3 residues within 4Å: Chain A: D.77, S.116, N.401 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.116, A:N.401

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Glover, H. et al., Photoswitch dissociation from a G protein-coupled receptor resolved by time-resolved serial crystallography. Nat Commun (2024)

Release Date

2025-01-08

Peptides

Adenosine receptor A2a,Soluble cytochrome b562: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Adenosine receptor A2a,Soluble cytochrome b562

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