SMTL ID : 8rw4.1

Crystal structure of the adenosine A2A receptor in complex with the synthetic photoswitch 'AzoSwitch2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x 01: 8-[(~{E})-(3,4-dimethoxyphenyl)diazenyl]-1,3-diethyl-7~{H}-purine-2,6-dione

01.1: 14 residues within 4Å: Chain A: I.91, S.92, V.109, L.110, F.193, E.194, M.202, W.367, L.370, N.374, L.388, M.391, Y.392, I.395 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.91, A:F.193, A:W.367, A:L.370 Hydrogen bonds: A:E.194, A:N.374 Water bridges: A:E.194, A:E.194, A:S.398 pi-Stacking: A:F.193, A:F.193

3 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 9 residues within 4Å: Chain A: L.368, P.369, I.373, F.376, C.383, S.384, A.386, L.390 Ligands: OLA.14 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.368, A:P.369, A:I.373, A:F.376, A:L.390 Hydrogen bonds: A:S.384 CLR.3: 8 residues within 4Å: Chain A: L.368, I.372, C.375, F.376, F.379, C.380 Ligands: OLA.5, OLA.12 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.368, A:I.372, A:F.376, A:F.376, A:F.376, A:F.379 Water bridges: A:F.379 CLR.4: 8 residues within 4Å: Chain A: F.87, A.97, A.98, G.101, F.104, I.105 Ligands: OLA.7, OLA.19 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.87, A:A.97, A:A.98, A:F.104, A:I.105, A:I.105 Hydrogen bonds: A:A.98

19 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)

OLA.5: 4 residues within 4Å: Chain A: L.212, F.379 Ligands: CLR.3, OLA.6 Ligand excluded by PLIP OLA.6: 3 residues within 4Å: Chain A: Y.204, F.379 Ligands: OLA.5 Ligand excluded by PLIP OLA.7: 9 residues within 4Å: Chain A: V.82, L.83, P.86, F.87, T.90, F.95, C.96 Ligands: CLR.4, OLA.8 Ligand excluded by PLIP OLA.8: 2 residues within 4Å: Ligands: OLA.7, OLA.23 Ligand excluded by PLIP OLA.9: 6 residues within 4Å: Chain A: C.53, V.56, W.57, V.71, A.75, L.79 Ligand excluded by PLIP OLA.10: 3 residues within 4Å: Chain A: S.32, T.36, L.39 Ligand excluded by PLIP OLA.11: 2 residues within 4Å: Chain A: W.389 Ligands: OLA.14 Ligand excluded by PLIP OLA.12: 8 residues within 4Å: Chain A: L.212, L.215, L.219, Y.222, A.357, A.364 Ligands: CLR.3, OLA.17 Ligand excluded by PLIP OLA.13: 6 residues within 4Å: Chain A: A.147, A.151, W.154, F.158 Ligands: OLA.16, OLA.20 Ligand excluded by PLIP OLA.14: 4 residues within 4Å: Chain A: W.389, L.390 Ligands: CLR.2, OLA.11 Ligand excluded by PLIP OLA.15: 6 residues within 4Å: Chain A: G.30, V.37, L.388, W.389, Y.392, V.396 Ligand excluded by PLIP OLA.16: 9 residues within 4Å: Chain A: Y.68, V.71, S.72, A.75, L.79, I.150, W.154, F.158 Ligands: OLA.13 Ligand excluded by PLIP OLA.17: 4 residues within 4Å: Chain A: G.361, A.364, L.368 Ligands: OLA.12 Ligand excluded by PLIP OLA.18: 3 residues within 4Å: Chain A: I.41, T.400, V.403 Ligand excluded by PLIP OLA.19: 6 residues within 4Å: Chain A: A.98, C.99, H.100, G.101, F.104 Ligands: CLR.4 Ligand excluded by PLIP OLA.20: 5 residues within 4Å: Chain A: L.162, M.165, L.166 Ligands: OLA.13, OLA.21 Ligand excluded by PLIP OLA.21: 3 residues within 4Å: Chain A: M.165, L.166 Ligands: OLA.20 Ligand excluded by PLIP OLA.22: 7 residues within 4Å: Chain A: F.69, F.118, A.122, I.125, D.126, V.141, I.149 Ligand excluded by PLIP OLA.23: 4 residues within 4Å: Chain A: T.90, T.93, F.95 Ligands: OLA.8 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.24: 3 residues within 4Å: Chain A: D.77, S.116, N.401 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.116, A:S.402

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Glover, H. et al., Photoswitch dissociation from a G protein-coupled receptor resolved by time-resolved serial crystallography. Nat Commun (2024)

Release Date

2025-01-08

Peptides

Adenosine receptor A2a,Soluble cytochrome b562: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Adenosine receptor A2a,Soluble cytochrome b562

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