SMTL ID : 8rwc.1

Crystal structure of the adenosine A2A receptor in complex with the synthetic photoswitch 'StilSwitch2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

monomer

Ligands

1 x 01: 8-[(~{E})-2-[3,4-bis(oxidanyl)phenyl]ethenyl]-1,3-diethyl-7-methyl-purine-2,6-dione

01.1: 12 residues within 4Å: Chain A: I.91, V.109, L.110, F.193, E.194, M.202, W.367, L.370, N.374, L.388, M.391, I.395 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.91, A:E.194, A:W.367, A:L.370, A:L.388 Hydrogen bonds: A:N.374 pi-Stacking: A:F.193, A:F.193

4 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 9 residues within 4Å: Chain A: L.368, P.369, I.372, I.373, F.376, C.383, S.384, L.390 Ligands: OLA.15 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.368, A:P.369, A:I.372, A:I.372, A:I.373, A:F.376, A:L.390 Hydrogen bonds: A:S.384 CLR.3: 8 residues within 4Å: Chain A: F.87, A.97, A.98, G.101, F.104, I.105 Ligands: CLR.5, OLC.6 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.87, A:A.97, A:F.104, A:I.105, A:I.105 Hydrogen bonds: A:A.98 Water bridges: A:Q.188 CLR.4: 8 residues within 4Å: Chain A: L.212, I.372, C.375, F.376, F.379, C.380 Ligands: OLA.10, OLC.21 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.212, A:I.372, A:F.376, A:F.376, A:F.376, A:F.379 Water bridges: A:F.379 CLR.5: 6 residues within 4Å: Chain A: H.100, G.101, F.104, M.165 Ligands: CLR.3, OLA.23 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.104, A:F.104, A:F.104

6 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)

OLC.6: 11 residues within 4Å: Chain A: V.82, L.83, F.87, T.90, F.95, C.96, I.105, Q.188 Ligands: CLR.3, OLA.7, OLC.11 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.82, A:L.83, A:F.87, A:T.90, A:F.95, A:I.105 Hydrogen bonds: A:C.96, A:C.96, A:Q.188 OLC.8: 9 residues within 4Å: Chain A: Y.68, V.71, A.75, L.79, L.83, I.150, W.154, F.158 Ligands: OLA.24 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.68, A:V.71, A:A.75, A:L.79, A:L.83, A:I.150, A:W.154, A:W.154, A:F.158 OLC.11: 3 residues within 4Å: Ligands: OLC.6, OLA.7, OLA.26 No protein-ligand interaction detected (PLIP) OLC.21: 3 residues within 4Å: Chain A: F.379 Ligands: CLR.4, OLA.27 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.379, A:F.379 OLC.22: 7 residues within 4Å: Chain A: H.100, M.165, L.166, G.167, N.169 Ligands: OLA.23, OLA.25 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.169 OLC.28: 9 residues within 4Å: Chain A: P.27, I.28, S.31, I.35, L.39, T.93 Ligands: OLA.7, OLA.12, OLA.26 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.35, A:I.35, A:L.39 Hydrogen bonds: A:S.31

19 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)

OLA.7: 9 residues within 4Å: Chain A: V.82, P.86, T.90, T.93, F.95 Ligands: OLC.6, OLC.11, OLA.26, OLC.28 Ligand excluded by PLIP OLA.9: 5 residues within 4Å: Chain A: G.30, W.389, Y.392, V.396 Ligands: OLA.19 Ligand excluded by PLIP OLA.10: 7 residues within 4Å: Chain A: L.215, L.219, Y.222, A.357, A.360, A.364 Ligands: CLR.4 Ligand excluded by PLIP OLA.12: 4 residues within 4Å: Chain A: S.32, T.36, L.39 Ligands: OLC.28 Ligand excluded by PLIP OLA.13: 6 residues within 4Å: Chain A: F.69, A.122, I.125, D.126, I.149, C.153 Ligand excluded by PLIP OLA.14: 2 residues within 4Å: Chain A: I.152 Ligands: OLA.25 Ligand excluded by PLIP OLA.15: 4 residues within 4Å: Chain A: P.387, W.389, L.393 Ligands: CLR.2 Ligand excluded by PLIP OLA.16: 6 residues within 4Å: Chain A: C.53, V.56, W.57, V.71, A.75 Ligands: OLA.30 Ligand excluded by PLIP OLA.17: 5 residues within 4Å: Chain A: L.397, V.404, I.408, Y.411 Ligands: OLA.19 Ligand excluded by PLIP OLA.18: 5 residues within 4Å: Chain A: L.44, L.47, G.48, L.51, F.407 Ligand excluded by PLIP OLA.19: 6 residues within 4Å: Chain A: I.41, L.44, T.400, F.407 Ligands: OLA.9, OLA.17 Ligand excluded by PLIP OLA.20: 1 residues within 4Å: Chain A: W.389 Ligand excluded by PLIP OLA.23: 8 residues within 4Å: Chain A: H.100, F.158, L.162, M.165, L.166 Ligands: CLR.5, OLC.22, OLA.24 Ligand excluded by PLIP OLA.24: 6 residues within 4Å: Chain A: A.147, V.155, F.158 Ligands: OLC.8, OLA.23, OLA.25 Ligand excluded by PLIP OLA.25: 9 residues within 4Å: Chain A: T.144, G.148, I.152, V.155, L.156, A.159 Ligands: OLA.14, OLC.22, OLA.24 Ligand excluded by PLIP OLA.26: 3 residues within 4Å: Ligands: OLA.7, OLC.11, OLC.28 Ligand excluded by PLIP OLA.27: 4 residues within 4Å: Chain A: Y.204, V.213, F.379 Ligands: OLC.21 Ligand excluded by PLIP OLA.29: 1 residues within 4Å: Chain A: G.361 Ligand excluded by PLIP OLA.30: 4 residues within 4Å: Chain A: V.50, W.54, W.57 Ligands: OLA.16 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.31: 4 residues within 4Å: Chain A: L.73, D.77, S.116, N.401 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.77, A:S.116 Water bridges: A:D.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Glover, H. et al., Photoswitch dissociation from a G protein-coupled receptor resolved by time-resolved serial crystallography. Nat Commun (2024)

Release Date

2025-01-08

Peptides

Adenosine receptor A2a,Soluble cytochrome b562: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Adenosine receptor A2a,Soluble cytochrome b562

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