SMTL ID : 8s9z.1

Mpro inhibitors of SARS-CoV-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x P6S- ZU0- PHE- ZV7- NH2: Mpro inhibitor(Non-covalent)

P6S-ZU0-PHE-ZV7-NH2.1: 21 residues within 4Å: Chain A: H.41, M.49, Y.54, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, E.166, P.168, H.172, D.187, R.188, Q.189, T.190, A.191, Q.192 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:H.41, A:M.49, A:P.168, A:D.187, A:Q.189 Hydrogen bonds: A:G.143, A:S.144, A:S.144, A:C.145, A:H.164, A:E.166, A:E.166, A:E.166, A:E.166, A:Q.189 Halogen bonds: A:N.142 P6S-ZU0-PHE-ZV7-NH2.2: 21 residues within 4Å: Chain B: H.41, M.49, Y.54, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, E.166, P.168, H.172, D.187, R.188, Q.189, T.190, A.191, Q.192 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:H.41, B:M.49, B:P.168, B:D.187, B:Q.189 Hydrogen bonds: B:G.143, B:S.144, B:S.144, B:C.145, B:H.164, B:E.166, B:E.166, B:E.166, B:Q.189 Halogen bonds: B:N.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blankenship, L.R. et al., Structure of MPI89 with Mpro of SARS-CoV-2 at 1.85A resolution. To Be Published

Release Date

2024-04-03

Peptides

3C-like proteinase nsp5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3C-like proteinase nsp5

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